code-review

Workflow runs for code-review

• [api] Deprecate copy in favor of inplace | Update functions

  skipped:
  code-review#213:Pull request#308labeledbylucas-diedrich
  api/copy-inplace/update-functions

  Oct 19, 20261s
  More actions for workflow run 213

• [api] Deprecate copy in favor of inplace | Decorator

  skipped:
  code-review#212:Pull request#307labeledbylucas-diedrich
  api/copy-inplace/decorator

  Oct 18, 20261s
  More actions for workflow run 212

• [fix] pycombat copy

  skipped:
  code-review#211:Pull request#306labeledbylucas-diedrich
  fix/pycombat-copy

  Oct 16, 20261s
  More actions for workflow run 211

• [dep](deps): Bump codecov/codecov-action from 7.0.0 to 7.1.1

  skipped:
  code-review#210:Pull request#295labeledbydependabot[bot]Bot
  dependabot/github_actions/codecov/codecov-action-7.1.1

  Sep 24, 2026Skipped
  More actions for workflow run 210

• [dep](deps): Bump codecov/codecov-action from 7.0.0 to 7.1.1

  skipped:
  code-review#209:Pull request#295labeledbydependabot[bot]Bot
  dependabot/github_actions/codecov/codecov-action-7.1.1

  Sep 24, 20261s
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• [dep](deps): Bump codecov/codecov-action from 7.0.0 to 7.1.1

  skipped:
  code-review#208:Pull request#295labeledbydependabot[bot]Bot
  dependabot/github_actions/codecov/codecov-action-7.1.1

  Sep 24, 20261s
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• [dep](deps): Bump codecov/codecov-action from 7.0.0 to 7.1.1

  skipped:
  code-review#207:Pull request#295labeledbydependabot[bot]Bot
  dependabot/github_actions/codecov/codecov-action-7.1.1

  Sep 24, 20261s
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• commit fix to prevent nan coefficients from propagating into valid contrasts

  skipped:
  code-review#206:Pull request#294labeledbyvbrennsteiner
  missing_condition_fix

  Sep 22, 20262s
  More actions for workflow run 206

• [VERSION] Bump version to 0.4.0

  skipped:
  code-review#205:Pull request#286labeledbylucas-diedrich
  bump_minor_from_0.3.1-dev0

  Sep 9, 20261s
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• [refactor] Speedup anndata factory

  skipped:
  code-review#204:Pull request#281labeledbylucas-diedrich
  refactor/anndata-factory

  Sep 9, 20268s
  More actions for workflow run 204

• [docs] Update docstring of PSM reader

  skipped:
  code-review#203:Pull request#282labeledbylucas-diedrich
  docs/update-psm-reader

  Sep 8, 20261s
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• [refactor] Speedup anndata factory

  skipped:
  code-review#202:Pull request#281labeledbylucas-diedrich
  refactor/anndata-factory

  Sep 8, 20269s
  More actions for workflow run 202

• [docs] Rerun notebook, update transitive closure

  skipped:
  code-review#201:Pull request#278labeledbylucas-diedrich
  docs/update-pelsa

  Sep 5, 20261s
  More actions for workflow run 201

• [fix] Fix key issue in tutorial 00

  skipped:
  code-review#200:Pull request#279labeledbylucas-diedrich
  fix/use-existing-key-00_data-sources

  Sep 5, 20268s
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• [API] Fix PMAD return signature

  skipped:
  code-review#199:Pull request#275labeledbylucas-diedrich
  fix/api-consistency_metrics-II

  Sep 3, 20261s
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• [API] Fix PMAD return signature

  skipped:
  code-review#198:Pull request#275labeledbylucas-diedrich
  fix/api-consistency_metrics-II

  Sep 3, 20261s
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• [feature] Allow for center/scale only in apt.pp.scale_and_center

  skipped:
  code-review#197:Pull request#274labeledbylucas-diedrich
  feature/median-scale-center

  Sep 1, 20261s
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• harmonizing differential expression output

  skipped:
  code-review#196:Pull request#273labeledbyvbrennsteiner
  harmonize_diff_exp_outputs

  Sep 1, 20261s
  More actions for workflow run 196

• harmonizing differential expression output

  skipped:
  code-review#195:Pull request#273labeledbyvbrennsteiner
  harmonize_diff_exp_outputs

  Sep 1, 20261s
  More actions for workflow run 195

• Avoid eager package imports

  failed:
  code-review#194:Pull request#254labeledbylucas-diedrich
  pjhartout:lazy-imports

  Aug 24, 202630d 0h 3m 19s
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• harmonized markdown in study 04 (scDVP)

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  code-review#193:Pull request#253labeledbylucas-diedrich
  harmonize_04_study

  Aug 24, 202611s
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• first pass for study 03 harmonization to common study layout

  skipped:
  code-review#192:Pull request#250labeledbylucas-diedrich
  harmonize_study_03

  Aug 24, 20261s
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• renumber headers in study notebook 04

  skipped:
  code-review#191:Pull request#249labeledbylucas-diedrich
  harmonize_study_04

  Aug 24, 20261s
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• Harmonize study 01

  skipped:
  code-review#190:Pull request#248labeledbylucas-diedrich
  harmonize_study_01

  Aug 24, 20261s
  More actions for workflow run 190

• [Docs] Tutorial 2: Minimal changes to use mulink-internal plotting

  skipped:
  code-review#189:Pull request#271labeledbylucas-diedrich
  docs/mulink-capabilities

  Aug 22, 20261s
  More actions for workflow run 189