Performance optimisations for the compartmental feature. (WIP) - #1319
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LeanderEwert wants to merge 489 commits into
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Performance optimisations for the compartmental feature. (WIP)#1319LeanderEwert wants to merge 489 commits into
LeanderEwert wants to merge 489 commits into
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… close to zero to skip calculation of step-function. State of functionality: Almost fully working. Explicitly written ODEs for synapses not supported yet. (next up)
…ion changed to be done by decorators. Concentration mechanism imlplementation and unification of mechanism info collection in progress.
…ion changed to be done by decorators. Concentration mechanism imlplementation and unification of mechanism info collection in progress.
…erEwert # Conflicts: # doc/fig/nestml_clip_art.png # doc/fig/synapse_conceptual.png # pynestml/codegeneration/resources_nest/point_neuron/directives/CommonPropertiesDictionaryReader.jinja2 # pynestml/frontend/frontend_configuration.py # pynestml/frontend/pynestml_frontend.py # pynestml/generated/PyNestMLLexer.py # pynestml/generated/PyNestMLParser.interp # pynestml/generated/PyNestMLParser.py # pynestml/generated/PyNestMLParserVisitor.py # pynestml/utils/messages.py # pynestml/visitors/ast_symbol_table_visitor.py # tests/cocos_test.py
…stem. ToDo: Completing commenting and removing legacy code-parts and inline debugging code.
-Compile warnings fixed. -v_comp nestml state excluded from becoming mechanism state.
-syns_info_enricher structure aligned to other mechanism enrichers. -debugging code removed -antlr4-python3-runtime set to 4.12 (from 4.10) in requirements.txt to remove missmatch warnings.
…erEwert # Conflicts: # pynestml/generated/PyNestMLParser.interp # pynestml/generated/PyNestMLParser.py # pynestml/grammars/PyNestMLParser.g4 # requirements.txt # tests/docstring_comment_test.py
…erEwert # Conflicts: # pynestml/generated/PyNestMLParser.interp # pynestml/generated/PyNestMLParser.py # pynestml/grammars/PyNestMLParser.g4 # requirements.txt # tests/docstring_comment_test.py
…/LeanderEwert # Conflicts: # pynestml/generated/PyNestMLParser.interp # pynestml/generated/PyNestMLParser.py # pynestml/grammars/PyNestMLParser.g4 # requirements.txt # tests/docstring_comment_test.py
…o neuron if parameter is not of type ASTNeuron
…ameters etc. where an index in the array range points to the states/parameters that used to be contained in its own object representing a mechanism in one specific compartment.
… did not like the format of.
…p and the required modification of the datastructure.
…erEwert # Conflicts: # pynestml/codegeneration/printers/nest_variable_printer.py # pynestml/codegeneration/printers/python_variable_printer.py # pynestml/codegeneration/resources_nest/point_neuron/directives/IfStatement.jinja2 # pynestml/frontend/pynestml_frontend.py # pynestml/symbols/variable_symbol.py # pynestml/utils/ast_utils.py # pynestml/utils/messages.py # tests/cocos_test.py
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February 17, 2026 13:17
excluded ode solution states from CSE.
Function parameter exclusion from CSE.
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Various performance optimisations for the cm feature, including streamlined data movement, a more SIMD-friendly variable layout, common sub-expression elimination across multiple expressions, and a more efficient synapse implementation.