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Documentation correction: cutoff analysis output in callpeaks docs

Bug Report

Status: Open.

#738 In macs3-project/MACS;

· cmatKhan opened on Jul 8, 2026

Bug: narrowPeak File fails to be saved

Bug Report

Status: Open.

#730 In macs3-project/MACS;

· SportyScientist opened on Jun 1, 2026

Bug: thick background Poisson p-value at peak-desert region from ATAC-seq.

Bug Report

Status: Open.

#729 In macs3-project/MACS;

· yang-kaist opened on May 7, 2026

Q: BdgPeakcall output format

General Question

Status: Open.

#725 In macs3-project/MACS;

· marinafloresp opened on Mar 19, 2026

Q. How is fragment length 'd' calculated with --nomodel?

Status: Open.

#722 In macs3-project/MACS;

· swati375 opened on Feb 12, 2026

Q: Callpeak and bdgcmp q value computation

General Question

Status: Open.

#721 In macs3-project/MACS;

· LinearParadox opened on Feb 4, 2026

Bug: HMMRATAC mode won't take -f FRAG input format

Bug Report

Status: Open.

#719 In macs3-project/MACS;

· chrysania opened on Jan 26, 2026

Bug: macs3 bdgdiff produces scores less than -C cutoff in cond1/2 bed file, and scores of all zeroes in common bed file

Bug Report

Status: Open.

#715 In macs3-project/MACS;

· huipan1973 opened on Nov 17, 2025

Bug: macs3 hmmratac crashes with --save-likelihoods option

Bug Report

Status: Open.

#713 In macs3-project/MACS;

· mosheolshansky-dot opened on Nov 6, 2025

Q/Feat: Additional clarity/control of HMMRATAC accessible region calling

Feature Request

Status: Open.

#711 In macs3-project/MACS;

· mrendleman opened on Sep 11, 2025

How does --scale-to {large,small} work

Status: Open.

#710 In macs3-project/MACS;

· leon945945 opened on Aug 15, 2025

Q: MACS3 Broad Peak Cutoff Analysis

General Question

Status: Open.

#707 In macs3-project/MACS;

· infurnoheat opened on Jul 18, 2025