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Interactive desktop simulator (Windows/Mac) for systems biology. Built on top of the simulation engine libroadrunner.
The current version suppotrs: Time course simulation, steady-state, real-time interactive simulation via sliders, parameter scans, and MCA style sensitivity analysis (https://en.wikipedia.org/wiki/Metabolic_control_analysis). It uses the antimony format to describe models and is fully SBML compliant.
I would like to thank Guillermo Canedo Ramirez who did an excellent job in making the 3D bar plotting compoment (https://github.com/gcanedo/T3DBarGraph)
The web version which runs inside the browser can be found at
Source code: https://github.com/sys-bio/WebIridium
GitHub page: https://sys-bio.github.io/WebIridium/
Here are some screenshots of the desktop version:
Time course simulation:
Time course parameter scan:
Control coefficients 3D plot (random network):
Control coefficients 3D plot (random network):
Millard E coli model (2016)
Control coefficient matrix:
