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1. rnabioco/clustifyr rnabioco/clustifyr Public

   Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

   R 126 15

2. Eastmanmd/DECONVersation Eastmanmd/DECONVersation Public

   DECONVersation uses LLM-derived embeddings to deconvolve bulk RNA-seq data into robust cell type proportions, mitigating batch effects inherent to single-cell reference matrices.

   Python 3

3. rnabioco/scraps rnabioco/scraps Public

   Single Cell RNA PolyA Site Discovery

   Python 11 4

4. color_repel color_repel Public

   Repel Visually Similar Colors for Colorblind Users (CRAN)

   R 11

5. SCoreRust SCoreRust Public

   Single Cell Pathway Scoring powered by Rust

   Rust 1

6. rnabioco/squirrelbox rnabioco/squirrelbox Public

   Shiny app to browse hibernating ground squirrel brain tissue RNA-seq data, new genome assembly and transcriptome annotation.

   R 4 2