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    27 repositories

    • cayman

      Public
      A command-line tool for profiling CAZyme abundances in metagenomic datasets.
      Python
      •
      MIT License
      •4•21•1•0•Updated Apr 25, 2026Apr 25, 2026

    • ZellerLab.github.io

      Public
      Website for the Zeller Lab
      HTML
      •42•1•4•0•Updated Apr 17, 2026Apr 17, 2026

    • flexprofiler

      Public
      Highly parallelised multi-taxonomic profiling of shotgun and 16S metagenomic data
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 17, 2026Mar 17, 2026

    • gut-microbial-metabolism-of-immunosuppressants

      Public
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Mar 16, 2026Mar 16, 2026

    • GECCO

      Public
      GEne Cluster prediction with COnditional random fields.
      pythonbioinformaticsgenomics
      pythonbioinformaticsgenomicsmetagenomicssecondary-metabolitesnatural-productsbiosynthetic-gene-clusters
      Python
      •
      GNU General Public License v3.0
      •8•84•7•0•Updated Mar 10, 2026Mar 10, 2026

    • cayman_paper

      Public
      R
      •0•1•0•0•Updated Mar 3, 2026Mar 3, 2026

    • IGUA

      Public
      Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.
      Python
      •
      GNU General Public License v3.0
      •2•17•0•0•Updated Feb 26, 2026Feb 26, 2026

    • CHAMOIS

      Public
      Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.
      Python
      •
      GNU General Public License v3.0
      •1•8•0•0•Updated Feb 23, 2026Feb 23, 2026

    • Buchinger_Long_Term_Fasting

      Public
      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Jan 22, 2026Jan 22, 2026

    • nevermore

      Public
      Zeller-group fork of Nevermore
      Nextflow
      •
      MIT License
      •1•1•2•0•Updated Jan 13, 2026Jan 13, 2026

    • ds-iai

      Public
      R
      •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • crc-meta-ii

      Public
      R
      •0•1•0•0•Updated Jul 22, 2025Jul 22, 2025

    • SIMBA

      Public
      R package for the simulation of metagenomic samples
      R
      •3•2•4•1•Updated Mar 31, 2025Mar 31, 2025

    • stag

      Public
      A hierarchical taxonomic classifier for metagenomic sequences
      microbiomesequence-classification
      microbiomesequence-classification
      Python
      •2•8•11•1•Updated Nov 30, 2024Nov 30, 2024

    • An-Atlas-of-the-Liver-Cancer-Microbiome

      Public
      An Atlas of the Liver Cancer Microbiome
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 4, 2024Sep 4, 2024

    • BAMBI

      Public
      Benchmarking Analysis of MicroBiome Inference methods
      R
      •1•2•0•0•Updated Aug 23, 2024Aug 23, 2024

    • vortex_light

      Public
      Nextflow
      •
      MIT License
      •0•1•0•1•Updated May 29, 2024May 29, 2024

    • siamcat

      Public
      R package for Statistical Inference of Associations between Microbial Communities And host phenoType
      R
      •15•58•10•1•Updated Jan 30, 2024Jan 30, 2024

    • crc_meta

      Public
      Code and analysis results for the CRC shotgun meta-analysis
      R
      •
      GNU General Public License v3.0
      •31•39•0•0•Updated Sep 28, 2022Sep 28, 2022

    • commensal_clostridiales

      Public
      Analysis code for the commensal Clostridiales project
      R
      •0•0•0•0•Updated Jul 4, 2022Jul 4, 2022

    • GECCO-data

      Public
      The dvc pipeline to build the data for training GECCO.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 7, 2022Jun 7, 2022

    • gaga2

      Public
      Nextflow
      •0•3•2•1•Updated Nov 24, 2021Nov 24, 2021

    • specI_utilities

      Public
      usefuls scripts to work with specI clusters
      Python
      •0•0•0•0•Updated Mar 24, 2021Mar 24, 2021

    • siamcat_paper

      Public
      Analysis scripts and results presented in the SIAMCAT paper
      R
      •
      GNU General Public License v3.0
      •3•4•0•0•Updated Jan 29, 2021Jan 29, 2021

    • EBI_metaG_bioinformatics

      Public
      Materials for the EMBL-EBI Metagenomics Bioinformatics course
      HTML
      •0•0•0•0•Updated Nov 6, 2020Nov 6, 2020

    • hd-hub-tools

      Public
      HD-HuB Tool Descriptions
      Python
      •0•0•0•0•Updated Sep 24, 2019Sep 24, 2019

    • hd-hub-profiles

      Public
      Profiles of HD-HuB Members
      0•0•0•0•Updated Aug 30, 2019Aug 30, 2019
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