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    • cayman

      Public
      A command-line tool for profiling CAZyme abundances in metagenomic datasets.
      Python
      MIT License
      42110Updated Apr 25, 2026Apr 25, 2026
    • Website for the Zeller Lab
      HTML
      42140Updated Apr 17, 2026Apr 17, 2026
    • Highly parallelised multi-taxonomic profiling of shotgun and 16S metagenomic data
      Nextflow
      MIT License
      0000Updated Mar 17, 2026Mar 17, 2026
    • R
      GNU General Public License v3.0
      0200Updated Mar 16, 2026Mar 16, 2026
    • GECCO

      Public
      GEne Cluster prediction with COnditional random fields.
      Python
      GNU General Public License v3.0
      88470Updated Mar 10, 2026Mar 10, 2026
    • R
      0100Updated Mar 3, 2026Mar 3, 2026
    • IGUA

      Public
      Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.
      Python
      GNU General Public License v3.0
      21700Updated Feb 26, 2026Feb 26, 2026
    • CHAMOIS

      Public
      Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.
      Python
      GNU General Public License v3.0
      1800Updated Feb 23, 2026Feb 23, 2026
    • Creative Commons Zero v1.0 Universal
      0200Updated Jan 22, 2026Jan 22, 2026
    • nevermore

      Public
      Zeller-group fork of Nevermore
      Nextflow
      MIT License
      1120Updated Jan 13, 2026Jan 13, 2026
    • ds-iai

      Public
      R
      0000Updated Oct 28, 2025Oct 28, 2025
    • R
      0100Updated Jul 22, 2025Jul 22, 2025
    • SIMBA

      Public
      R package for the simulation of metagenomic samples
      R
      3241Updated Mar 31, 2025Mar 31, 2025
    • stag

      Public
      A hierarchical taxonomic classifier for metagenomic sequences
      Python
      28111Updated Nov 30, 2024Nov 30, 2024
    • An Atlas of the Liver Cancer Microbiome
      R
      GNU General Public License v3.0
      0100Updated Sep 4, 2024Sep 4, 2024
    • BAMBI

      Public
      Benchmarking Analysis of MicroBiome Inference methods
      R
      1200Updated Aug 23, 2024Aug 23, 2024
    • Nextflow
      MIT License
      0101Updated May 29, 2024May 29, 2024
    • siamcat

      Public
      R package for Statistical Inference of Associations between Microbial Communities And host phenoType
      R
      1558101Updated Jan 30, 2024Jan 30, 2024
    • crc_meta

      Public
      Code and analysis results for the CRC shotgun meta-analysis
      R
      GNU General Public License v3.0
      313900Updated Sep 28, 2022Sep 28, 2022
    • Analysis code for the commensal Clostridiales project
      R
      0000Updated Jul 4, 2022Jul 4, 2022
    • The dvc pipeline to build the data for training GECCO.
      Python
      MIT License
      0000Updated Jun 7, 2022Jun 7, 2022
    • gaga2

      Public
      Nextflow
      0321Updated Nov 24, 2021Nov 24, 2021
    • usefuls scripts to work with specI clusters
      Python
      0000Updated Mar 24, 2021Mar 24, 2021
    • Analysis scripts and results presented in the SIAMCAT paper
      R
      GNU General Public License v3.0
      3400Updated Jan 29, 2021Jan 29, 2021
    • Materials for the EMBL-EBI Metagenomics Bioinformatics course
      HTML
      0000Updated Nov 6, 2020Nov 6, 2020
    • HD-HuB Tool Descriptions
      Python
      0000Updated Sep 24, 2019Sep 24, 2019
    • Profiles of HD-HuB Members
      0000Updated Aug 30, 2019Aug 30, 2019
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