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    • OpenMS

      Public
      The codebase of the OpenMS project
      C++
      Other
      42758521863Updated Apr 19, 2026Apr 19, 2026
    • Python
      Other
      1018Updated Apr 17, 2026Apr 17, 2026
    • ci-tools

      Public
      Internal CI/CD tools for OpenMS
      Shell
      BSD 3-Clause "New" or "Revised" License
      0000Updated Apr 17, 2026Apr 17, 2026
    • Data-Independent Acquisition Information and Tools Hub
      Python
      Other
      36010Updated Apr 16, 2026Apr 16, 2026
    • mzpeak

      Public
      MzPeak in C++
      C++
      BSD 3-Clause "New" or "Revised" License
      0000Updated Apr 16, 2026Apr 16, 2026
    • .github

      Public
      OpenMS organization public GitHub profile repository
      BSD 3-Clause "New" or "Revised" License
      2200Updated Apr 9, 2026Apr 9, 2026
    • Tutorials

      Public archive
      a dummy repo so we can have a checksum for GHA
      TeX
      BSD 3-Clause "New" or "Revised" License
      0000Updated Apr 9, 2026Apr 9, 2026
    • OpenMS-docs

      Public archive
      OpenMS Documentation.
      CSS
      BSD 3-Clause "New" or "Revised" License
      2825912Updated Apr 9, 2026Apr 9, 2026
    • pyopenms-docs

      Public archive
      pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
      Python
      Other
      7851490Updated Apr 9, 2026Apr 9, 2026
    • Streamlining Mass Spectrometry Data Visualization with Pandas
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      202388Updated Apr 8, 2026Apr 8, 2026
    • Python
      Other
      36173526Updated Apr 7, 2026Apr 7, 2026
    • Hugo sources for the OpenMS website
      HTML
      Other
      22072Updated Apr 7, 2026Apr 7, 2026
    • Streamlit deployment with Docker
      10105Updated Mar 27, 2026Mar 27, 2026
    • A repository of agentic created tools in proteomics using pyopenms
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 26, 2026Mar 26, 2026
    • contrib

      Public
      Automated CMake build scripts for the OpenMS contrib libraries
      CMake
      Other
      22041Updated Mar 25, 2026Mar 25, 2026
    • FLASHApp

      Public
      Python
      Other
      1004Updated Mar 20, 2026Mar 20, 2026
    • Scripts for generating plots about the usage of OpenMS
      R
      4201Updated Mar 18, 2026Mar 18, 2026
    • Python
      Other
      0005Updated Mar 14, 2026Mar 14, 2026
    • Rust
      0100Updated Mar 12, 2026Mar 12, 2026
    • Conda recipes for the bioconda channel.
      Shell
      MIT License
      3.9k000Updated Mar 7, 2026Mar 7, 2026
    • umetaflow

      Public
      Graphical user interface for the UmetaFlow pipepline for the analysis of metabolomics LC-MS data.
      Python
      111021Updated Feb 19, 2026Feb 19, 2026
    • Holds the packaged sources of chosen and tested versions of most of our needed contrib libraries.
      0000Updated Feb 6, 2026Feb 6, 2026
    • autowrap

      Public
      Generates Python Extension modules from Cythons PXD files
      Python
      Other
      2379335Updated Jan 14, 2026Jan 14, 2026
    • oDIAFlow

      Public
      An Open Nextflow pipeline for analyzing DIA-MS (Data-Independent Acquisition Mass Spectrometry) data.
      Nextflow
      BSD 3-Clause "New" or "Revised" License
      15160Updated Dec 20, 2025Dec 20, 2025
    • Assets

      Public
      Additional files (logos, splash screen, icons)
      Other
      2030Updated Dec 18, 2025Dec 18, 2025
    • Pythonic wrappers around PyOpenMS !!!!!!!!!!! under heavy development - only for internal use !!!!!!!!!!!
      Python
      1001Updated Dec 16, 2025Dec 16, 2025
    • Nodes etc. related to OpenMS
      Java
      83121Updated Dec 11, 2025Dec 11, 2025
    • External binary dependencies (e.g. search engine binaries) packaged in installers
      13211Updated Dec 11, 2025Dec 11, 2025
    • mz-calculator

      Public archive
      Python
      Other
      0105Updated Oct 20, 2025Oct 20, 2025
    • dockerfiles

      Public archive
      This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.
      Dockerfile
      8220Updated Jun 2, 2025Jun 2, 2025
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