All

36 repositories

CalcSim
Public
Matlab-based code for simulating detailed calcium dynamics in neurons, using reconstructed neuron morphologies
MATLAB
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Jun 29, 2024Jun 29, 2024
neuromorpho
Public
Making use of the REST API (NeuroMorpho.org v7) to query the database
Python
•
MIT License
•3•13•1•1•Updated Jun 20, 2023Jun 20, 2023
calciumDynamics_app
Public
UG4 app providing Lua scripts for calcium dynamics simulations on neurons
Lua
•
Other
•1•0•0•0•Updated Jan 3, 2022Jan 3, 2022
Biofilm
Public
Java
•
Other
•0•0•0•0•Updated Nov 27, 2021Nov 27, 2021
neuro_collection
Public
UG4 plugin for unified neuro-related functionality
C++
•
Other
•2•1•0•0•Updated Nov 2, 2021Nov 2, 2021
VRL-NeuroBox-Plugin
Public
VRL-NeuroBox-Plugin is the plugin for detailed simulations in Neuroscience.
java computational-neuroscience vrl-studio
java computational-neuroscience vrl-studio detailed simulations neurobiology
Java
•1•2•5•0•Updated Jul 29, 2021Jul 29, 2021
ProMeshScripts
Public
Scripts for ProMesh
grid imagej generation
grid imagej generation promesh polygons txt biofilm
Lua
•0•0•0•0•Updated May 31, 2021May 31, 2021
cable_neuron_app
Public
UG4 app providing Lua scripts for cable equation simulations on "1d" neurons
Lua
•
Other
•0•0•0•0•Updated Jan 30, 2021Jan 30, 2021
electricalModelingScripts
Public
Contains a collection of scripts for a quantitative comparison of various models for electrical signal processing in neurons
Lua
•
Other
•0•0•0•0•Updated Jan 10, 2021Jan 10, 2021
NeuGen
Public
NeuGen is made for generation of dendritic and axonal morphology of realistic neurons and networks in 3D
java simulation morphology
java simulation morphology neurons
Java
•
GNU Lesser General Public License v3.0
•1•12•0•0•Updated Nov 25, 2020Nov 25, 2020
electro_diffusion
Public
UG4 plugin for simulation of Poisson-Nernst-Planck problems
C++
•
Other
•0•0•0•0•Updated Oct 12, 2020Oct 12, 2020
cable_neuron
Public
UG4 plugin providing functionality for cable equation simulations on "1d" neurons
C++
•
Other
•0•0•0•0•Updated Oct 6, 2020Oct 6, 2020
AnaMorph
Public
Framework for creating 3d neuronal morphologies from point/diameter descriptions.
C++
•
GNU Lesser General Public License v3.0
•6•8•3•0•Updated Aug 26, 2020Aug 26, 2020
VRL-Density-Vis
Public
Density Visualization Plugin for VRL
Java
•
Other
•1•0•0•0•Updated Jul 27, 2020Jul 27, 2020
MembranePotentialMapping
Public
UG4 plugin for membrane potential mapping from 1d Neuron simulations to 3d
C++
•
Other
•1•0•0•0•Updated Jul 16, 2020Jul 16, 2020
plugin_CrackGenerator
Public
The CrackGenerator ug4 plugin
mesh-generation
mesh-generation
C++
•
Other
•0•0•0•0•Updated Jun 11, 2020Jun 11, 2020
Y-Generator
Public
Generates 2-way dendritic branches
Kotlin
•1•0•0•0•Updated Jun 3, 2020Jun 3, 2020
neurobox3d.github.io
Public
The Neurobox website
CSS
•0•0•1•0•Updated May 12, 2020May 12, 2020
neurobox3d
Public
CSS
•0•0•0•0•Updated May 12, 2020May 12, 2020
MembranePotentialMapping_app
Public
Example usage for the MembranePotentialMapping plugin
Lua
•
Other
•0•1•0•0•Updated May 1, 2020May 1, 2020
neurobox-packages
Public
Neurobox packages for UG4
package cpp plugins
package cpp plugins package-json ug ughub
GNU Lesser General Public License v3.0
•1•1•0•0•Updated Nov 1, 2019Nov 1, 2019
tetgen143
Public
TetGen v1.4.3 source
C++
•
Other
•1•0•0•1•Updated Oct 7, 2019Oct 7, 2019
app_CrackGenerator
Public
The CrackGenerator ug4 app.
Lua
•
GNU Lesser General Public License v3.0
•0•0•0•0•Updated Oct 14, 2018Oct 14, 2018
build_tools
Public
contains some utility for building NeuroBox (for developers)
Shell
•0•0•0•0•Updated Oct 11, 2018Oct 11, 2018
app_SkinLayerGenerator
Public
Generate skin layer volume meshes
ug vrl-studio computational
ug vrl-studio computational grids
Lua
•
Other
•0•0•0•0•Updated May 31, 2017May 31, 2017
plugin_SkinLayerGenerator
Public
Generates volume meshes of vertical columns of skin layers:
skin numerical-calculations grid-generation
skin numerical-calculations grid-generation promesh ug
C++
•
Other
•0•0•2•0•Updated Apr 17, 2017Apr 17, 2017
VRL-SkinLayerGenerator-Plugin
Public
The plugin generates volume meshes consisting of different skin layers.
skin simulation model
skin simulation model numerical-calculations vrl-studio ug4
Java
•
GNU Lesser General Public License v3.0
•0•0•0•0•Updated Mar 15, 2017Mar 15, 2017
plugin_Neurolucida
Public
Neurolucida ug4 plugin (Backend)
grid xml computational
grid xml computational neurolucida ugx
C++
•0•3•0•0•Updated Mar 1, 2017Mar 1, 2017
VRL-VolumeCalculator-Plugin
Public
VRL-VolumeCalculator-Plugin
Java
•2•0•0•0•Updated Dec 20, 2016Dec 20, 2016
VRL-Neurolucida-Project
Public
VRL-Neurolucida-Project for VRL-Studio (Frontend)
Java
•
GNU Lesser General Public License v3.0
•1•1•0•0•Updated Sep 8, 2016Sep 8, 2016

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NeuroBox3D

All

All

36 repositories

CalcSim

neuromorpho

calciumDynamics_app

Biofilm

neuro_collection

VRL-NeuroBox-Plugin

ProMeshScripts

cable_neuron_app

electricalModelingScripts

NeuGen

electro_diffusion

cable_neuron

AnaMorph

VRL-Density-Vis

MembranePotentialMapping

plugin_CrackGenerator

Y-Generator

neurobox3d.github.io

neurobox3d

MembranePotentialMapping_app

neurobox-packages

tetgen143

app_CrackGenerator

build_tools

app_SkinLayerGenerator

plugin_SkinLayerGenerator

VRL-SkinLayerGenerator-Plugin

plugin_Neurolucida

VRL-VolumeCalculator-Plugin

VRL-Neurolucida-Project

All

All

Repositories list

36 repositories