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    622 repositories

    • aind-ephys-portal

      Public
      SpikeInterface GUI Portal
      Python
      •
      MIT License
      •0•1•2•1•Updated Apr 24, 2026Apr 24, 2026

    • GIAnT-MATLAB

      Public
      Glutamate Imaging Analysis Toolbox, MATLAB implementation
      0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • aind-dynamic-foraging-data-utils

      Public
      Tools for the analysis of behavior and neural data from the dynamic foraging task
      Python
      •
      MIT License
      •1•2•24•4•Updated Apr 24, 2026Apr 24, 2026

    • zombie

      Public
      JavaScript
      •
      MIT License
      •1•0•7•1•Updated Apr 24, 2026Apr 24, 2026

    • aind-metadata-viz

      Public
      Website for public metadata visualization
      Python
      •
      MIT License
      •1•0•3•1•Updated Apr 24, 2026Apr 24, 2026

    • biodata-query

      Public
      Query support for databases storing biodata-schema records
      Python
      •
      MIT License
      •0•0•0•3•Updated Apr 24, 2026Apr 24, 2026

    • aind-json-utils-test-repo

      Public
      Repository for handling json utils. Test repo only.
      Python
      •
      MIT License
      •0•0•1•2•Updated Apr 24, 2026Apr 24, 2026

    • harp.device.quad-dac

      Public
      0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC
      harp
      harp
      C++
      •
      MIT License
      •0•0•31•2•Updated Apr 24, 2026Apr 24, 2026

    • aind-fip-qc-raw

      Public
      a capsule to generate QC based on fip raw data asest
      Python
      •
      MIT License
      •0•0•8•1•Updated Apr 24, 2026Apr 24, 2026

    • aind-fip-dff

      Public
      This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
      Python
      •
      MIT License
      •0•0•9•3•Updated Apr 24, 2026Apr 24, 2026

    • comb

      Public
      COMB: Combine-ophys-mfish-behavior
      Python
      •
      MIT License
      •0•1•29•5•Updated Apr 23, 2026Apr 23, 2026

    • exaspim-bigstitcher-fusion-capsule

      Public
      Capsule to run ExASPIM fusion job on AWS EMR
      Python
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • galen-uv-workflows

      Public
      Workflows using uv and commitizen to ci, tag, and publish python projects
      MIT License
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • Aind.Behavior.DynamicForaging

      Public
      A repository for the Dynamic Foraging task.
      C#
      •
      MIT License
      •0•0•9•4•Updated Apr 23, 2026Apr 23, 2026

    • aind-proteomics-annotator-gui

      Public
      GUI for annotating proteomics datasets
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • aind_data_outreach

      Public
      Python
      •
      MIT License
      •0•0•73•1•Updated Apr 23, 2026Apr 23, 2026

    • aind-octo-data-loaders

      Public
      Dataloader for the AIND-OCTO foundational model proyect
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 23, 2026Apr 23, 2026

    • abc-merfish-analysis

      Public
      Shared tools for accessing and processing ABC Atlas MERSCOPE data.
      Python
      •
      MIT License
      •0•0•1•0•Updated Apr 23, 2026Apr 23, 2026

    • aind-metadata-queries

      Public
      Libarary to host useful queries to AIND's metadata document database.
      Python
      •
      MIT License
      •0•0•4•2•Updated Apr 23, 2026Apr 23, 2026

    • mesoscale-cell-classification-head

      Public
      Cell classification head for mesoscale resolution using a 3D foundational image encoder
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • AutoTomeQC

      Public
      Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickne…
      sipe
      sipe
      Python
      •
      MIT License
      •0•0•3•0•Updated Apr 23, 2026Apr 23, 2026

    • aind-software-docs

      Public
      Centralized documentation repository for Scientific Computing, publishes to RTD
      Python
      •
      MIT License
      •0•1•31•12•Updated Apr 23, 2026Apr 23, 2026

    • aind-qc-portal

      Public
      Quality control portal
      Python
      •
      MIT License
      •1•2•15•1•Updated Apr 23, 2026Apr 23, 2026

    • aind-docker-images

      Public
      aind-data-infrastructure
      aind-data-infrastructure
      Dockerfile
      •
      MIT License
      •0•0•0•1•Updated Apr 23, 2026Apr 23, 2026

    • aind-mesoscale-tools

      Public
      Package for loading and interacting with AIND mesoscale anatomy whole-brain data
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • SLAy

      Public
      Python
      •3•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • aind-beh-ephys-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Apr 23, 2026Apr 23, 2026

    • device-spinner

      Public
      construct python objects from yaml files
      sipe-instrument-stack
      sipe-instrument-stack
      Python
      •
      MIT License
      •0•0•3•0•Updated Apr 23, 2026Apr 23, 2026

    • TigerASI

      Public
      a lightweight python interface for ASI brand Tiger Controllers
      spimpython-hardware-driver
      spimpython-hardware-driver
      Python
      •
      MIT License
      •2•6•12•1•Updated Apr 23, 2026Apr 23, 2026

    • aaopto-aotf

      Public
      python driver to control MPDSnCxx AOTF devices
      spimpython-hardware-driver
      spimpython-hardware-driver
      Python
      •
      MIT License
      •3•3•2•0•Updated Apr 23, 2026Apr 23, 2026
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