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    • SpikeInterface GUI Portal
      Python
      MIT License
      0121Updated Apr 24, 2026Apr 24, 2026
    • Glutamate Imaging Analysis Toolbox, MATLAB implementation
      0000Updated Apr 24, 2026Apr 24, 2026
    • Tools for the analysis of behavior and neural data from the dynamic foraging task
      Python
      MIT License
      12244Updated Apr 24, 2026Apr 24, 2026
    • zombie

      Public
      JavaScript
      MIT License
      1071Updated Apr 24, 2026Apr 24, 2026
    • aind-metadata-viz

      Public
      Website for public metadata visualization
      Python
      MIT License
      1031Updated Apr 24, 2026Apr 24, 2026
    • Query support for databases storing biodata-schema records
      Python
      MIT License
      0003Updated Apr 24, 2026Apr 24, 2026
    • aind-json-utils-test-repo

      Public
      Repository for handling json utils. Test repo only.
      Python
      MIT License
      0012Updated Apr 24, 2026Apr 24, 2026
    • 0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC
      C++
      MIT License
      00312Updated Apr 24, 2026Apr 24, 2026
    • a capsule to generate QC based on fip raw data asest
      Python
      MIT License
      0081Updated Apr 24, 2026Apr 24, 2026
    • This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
      Python
      MIT License
      0093Updated Apr 24, 2026Apr 24, 2026
    • comb

      Public
      COMB: Combine-ophys-mfish-behavior
      Python
      MIT License
      01295Updated Apr 23, 2026Apr 23, 2026
    • Capsule to run ExASPIM fusion job on AWS EMR
      Python
      0000Updated Apr 23, 2026Apr 23, 2026
    • galen-uv-workflows

      Public
      Workflows using uv and commitizen to ci, tag, and publish python projects
      MIT License
      0000Updated Apr 23, 2026Apr 23, 2026
    • A repository for the Dynamic Foraging task.
      C#
      MIT License
      0094Updated Apr 23, 2026Apr 23, 2026
    • GUI for annotating proteomics datasets
      Python
      MIT License
      0000Updated Apr 23, 2026Apr 23, 2026
    • aind_data_outreach

      Public
      Python
      MIT License
      00731Updated Apr 23, 2026Apr 23, 2026
    • Dataloader for the AIND-OCTO foundational model proyect
      Python
      MIT License
      0100Updated Apr 23, 2026Apr 23, 2026
    • Shared tools for accessing and processing ABC Atlas MERSCOPE data.
      Python
      MIT License
      0010Updated Apr 23, 2026Apr 23, 2026
    • Libarary to host useful queries to AIND's metadata document database.
      Python
      MIT License
      0042Updated Apr 23, 2026Apr 23, 2026
    • Cell classification head for mesoscale resolution using a 3D foundational image encoder
      Python
      MIT License
      0000Updated Apr 23, 2026Apr 23, 2026
    • Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickne…
      Python
      MIT License
      0030Updated Apr 23, 2026Apr 23, 2026
    • Centralized documentation repository for Scientific Computing, publishes to RTD
      Python
      MIT License
      013112Updated Apr 23, 2026Apr 23, 2026
    • Quality control portal
      Python
      MIT License
      12151Updated Apr 23, 2026Apr 23, 2026
    • Dockerfile
      MIT License
      0001Updated Apr 23, 2026Apr 23, 2026
    • Package for loading and interacting with AIND mesoscale anatomy whole-brain data
      Python
      MIT License
      0000Updated Apr 23, 2026Apr 23, 2026
    • SLAy

      Public
      Python
      3000Updated Apr 23, 2026Apr 23, 2026
    • Jupyter Notebook
      MIT License
      1100Updated Apr 23, 2026Apr 23, 2026
    • construct python objects from yaml files
      Python
      MIT License
      0030Updated Apr 23, 2026Apr 23, 2026
    • TigerASI

      Public
      a lightweight python interface for ASI brand Tiger Controllers
      Python
      MIT License
      26121Updated Apr 23, 2026Apr 23, 2026
    • python driver to control MPDSnCxx AOTF devices
      Python
      MIT License
      3320Updated Apr 23, 2026Apr 23, 2026
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