Issues

• VaSeBuilder crashes when supplied donor BAM/CRAM has no @RG line

  bug
  molgenis/VaSeBuilder#117 · Filter by author MatthieuBeukers opened on Dec 2, 2025

• VaSeBuilder stops when reads cannot be found

  bug
  molgenis/VaSeBuilder#116 · Filter by author MatthieuBeukers opened on Dec 2, 2025

• Add log warning when a supplied sample has only a BAM/CRAM or only a VCF file

  bug
  molgenis/VaSeBuilder#115 · Filter by author MatthieuBeukers opened on Dec 2, 2025

• Add option to slice donors without an acceptor

  enhancement
  molgenis/VaSeBuilder#113 · Filter by author TDMedina opened on Sep 2, 2020

• Add filter list (e.g. MVL) fields to VCF output INFO field

  enhancement
  molgenis/VaSeBuilder#93 · Filter by author TDMedina opened on Mar 26, 2020

• Identify sample sex for sex chromosome variants from genotype ploidy.

  enhancement
  molgenis/VaSeBuilder#90 · Filter by author TDMedina opened on Feb 12, 2020

• Hierarchical tree for selecting variants to include into a set.

  enhancement
  molgenis/VaSeBuilder#79 · Filter by author TDMedina opened on Oct 23, 2019

• Consider grouping variants from the same gene from the same sample.

  enhancement
  molgenis/VaSeBuilder#78 · Filter by author TDMedina opened on Oct 23, 2019
  1

• Check acceptor/donor context id before adding to variant context

  enhancement
  molgenis/VaSeBuilder#59 · Filter by author MatthieuBeukers opened on Sep 6, 2019

• Add sanity checks during the run

  enhancement
  molgenis/VaSeBuilder#56 · Filter by author MatthieuBeukers opened on Sep 3, 2019

• Using gender-mismatched donor/acceptors makes validation difficult.

  enhancement
  molgenis/VaSeBuilder#49 · Filter by author TDMedina opened on Aug 1, 2019