Issues

• Issue with reading h5seurat file

  mojaveazure/seurat-disk#201 · Filter by author Hiromikwl opened on Apr 29, 2026

• Deprecated slot argument in WriteH5Group causing failures

  mojaveazure/seurat-disk#199 · Filter by author YoukaiFromAccounting opened on Feb 6, 2026
  1

• after convering in scanpy adata.uns['rank_genes_groups']['names'] contain numbers not gene names

  mojaveazure/seurat-disk#196 · Filter by author bontix-77 opened on Oct 31, 2025
  2

• Error reading h5seurat file

  mojaveazure/seurat-disk#195 · Filter by author yesitsjess opened on Oct 28, 2025
  2

• SeuratDisk Should Be Published on CRAN or Bioconductor

  mojaveazure/seurat-disk#194 · Filter by author nick-youngblut opened on Oct 17, 2025

• LoadH5Seurat warning: "The slot argument of GetAssayData() is deprecated as of SeuratObject 5.0.0"

  mojaveazure/seurat-disk#192 · Filter by author JG1ANDONLY opened on Jul 22, 2025
  12

• Fehler in unlist(): 'recursive' must be a length-1 vector bei Nutzung von SeuratDisk mit Seurat 5

  mojaveazure/seurat-disk#191 · Filter by author Nutria228 opened on Jul 1, 2025
  4

• UMAP Embeddings missing by Default converting SeuratObject to Loom

  mojaveazure/seurat-disk#190 · Filter by author airabiotenor opened on Jun 27, 2025
  1

• GetAssayData() resp. SetAssayData()

  mojaveazure/seurat-disk#189 · Filter by author ghost opened on Jun 2, 2025

• Errors: error #000: ../../src/H5F.c in H5Fopen(): line 620: unable to open file class: HDF5 major: File accessibility minor: Unable to open file

  mojaveazure/seurat-disk#188 · Filter by author wyj20031116 opened on May 29, 2025

• Error in guess_dtype(x = x, ...) : unknown type when saving Seurat object

  mojaveazure/seurat-disk#187 · Filter by author LeaLe88 opened on May 12, 2025

• Convert anndata

  mojaveazure/seurat-disk#186 · Filter by author Cran73 opened on Jan 8, 2025
  1

• Error while using LoadH5Seurat : "Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'p' must be a nondecreasing vector"

  mojaveazure/seurat-disk#185 · Filter by author ellenbouchard opened on Oct 28, 2024
  2

• Converting the data from Seurat to Anndata

  mojaveazure/seurat-disk#184 · Filter by author TakuroIwami opened on Jul 11, 2024
  4

• Possible solution for converting categorical variable (factor) to proper text categoricals in H5AD

  mojaveazure/seurat-disk#183 · Filter by author mvfki opened on Jun 25, 2024
  1

• a perplexing error while converting H5AD to a Seurat object.

  mojaveazure/seurat-disk#182 · Filter by author TATABOX99 opened on Jun 24, 2024
  3

• error #000: ../../../src/H5D.c in H5Dvlen_reclaim(): line 732: invalid argument

  mojaveazure/seurat-disk#181 · Filter by author mayanbriller opened on May 9, 2024
  1

• Efficiently import gene expression values for a selected gene.

  mojaveazure/seurat-disk#180 · Filter by author le-raman opened on Apr 3, 2024

• seurat-disk installation in r

  mojaveazure/seurat-disk#179 · Filter by author yulchen810 opened on Mar 20, 2024
  3

• Error in adding RNA assay

  mojaveazure/seurat-disk#178 · Filter by author eblchen opened on Mar 15, 2024
  1

• saves only the variable features

  mojaveazure/seurat-disk#177 · Filter by author SofyaMa opened on Mar 3, 2024
  1

• error:not a sparse matrix when converting h5ad to Seurat

  mojaveazure/seurat-disk#176 · Filter by author gmcregis opened on Mar 1, 2024
  1

• Error: 'H5ADToH5Seurat' is not an exported object from 'namespace:SeuratDisk'

  mojaveazure/seurat-disk#175 · Filter by author Flu09 opened on Mar 1, 2024

• trouble converting SeuratObject to h5ad

  mojaveazure/seurat-disk#174 · Filter by author ncedi12 opened on Feb 21, 2024
  1

• Problem with loading a h5seurat file with LoadH5Seurat

  mojaveazure/seurat-disk#173 · Filter by author ghost opened on Jan 20, 2024
  1