Implement reduce_dimensions

[Graciaaa3]

Change Description

Closes #859

Solution Description

This PR introduces the initial framework for a reduce_dimensions verb to support multiple dimensionality reduction algorithms with Hyrax.

Current Progress

Added the reduce_dimensions verb.
Introduced the ReductionAlgorithm subclass structure to provide a generalized abstraction layer for dimensionality reduction methods. Migrated the existing UMAP implementation into the new reduce_dimensions framework while preserving current functionality and behavior.

Next Steps

• Implementing support for additional dimensionality reduction algorithms: t-SNE and PCA.
• Adding and updating documentation for the new API and configuration structure.
• Adding and updating tests for reduce_dimensions and newly supported algorithms.

Code Quality

• I have read the Contribution Guide and agree to the Code of Conduct
• My code follows the code style of this project
• My code builds (or compiles) cleanly without any errors or warnings
• My code contains relevant comments and necessary documentation

[codecov]

Codecov Report

❌ Patch coverage is 83.22785% with 53 lines in your changes missing coverage. Please review.
✅ Project coverage is 64.38%. Comparing base (b157303) to head (6dcacbb).
⚠️ Report is 27 commits behind head on main.

Files with missing lines	Patch %	Lines
...x/verbs/reduction_algorithms/algorithm_registry.py	68.75%	20 Missing ⚠️
src/hyrax/verbs/reduction_algorithms/tsne.py	69.69%	10 Missing ⚠️
src/hyrax/verbs/reduction_algorithms/pca.py	85.18%	8 Missing ⚠️
src/hyrax/verbs/reduction_algorithms/umap.py	85.18%	8 Missing ⚠️
src/hyrax/verbs/reduce_dimensions.py	89.23%	7 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #932      +/-   ##
==========================================
+ Coverage   63.82%   64.38%   +0.56%     
==========================================
  Files          74       81       +7     
  Lines        7693     7930     +237     
==========================================
+ Hits         4910     5106     +196     
- Misses       2783     2824      +41     

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[drewoldag]

This is looking like it's on the right track. Left a few comments, nothing too scary.

[drewoldag]

This batch of changes look reasonable.

[Graciaaa3]

At this point all the code/docstring/tests are finished. I will address the documentation updates in a separate PR.

[drewoldag]

Approved with a couple of comments to look at. Half are just wording suggestions and can be ignored. The one about refactoring the parallel code can be deferred. The others might be worth looking at.