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Added link to Binder and updated docs to reflect latest template - #235

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JSchripsema-IDM merged 11 commits into
laser-base:mainfrom
JSchripsema-IDM:binder
Jul 10, 2026
Merged

Added link to Binder and updated docs to reflect latest template#235
JSchripsema-IDM merged 11 commits into
laser-base:mainfrom
JSchripsema-IDM:binder

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Resolves issue #51. Also fixes existing issues in which the feedback form was hidden and inline math in notebooks wasn't displayed property.

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Pull request overview

Updates the documentation site to support interactive Binder launches for selected tutorial notebooks and fixes client-side rendering issues introduced by MkDocs Material instant navigation (inline MathJax re-typesetting + feedback form visibility).

Changes:

  • Add Binder launch links and clean notebook execution state (clear outputs / reset execution counts) for two tutorial notebooks.
  • Enable Material instant navigation and add custom JS for MathJax re-typesetting and feedback form activation.
  • Remove glossary auto-append/snippets configuration and delete the glossary include file.

Reviewed changes

Copilot reviewed 6 out of 23 changed files in this pull request and generated 5 comments.

Show a summary per file
File Description
mkdocs.yml Enables instant navigation and wires in new custom JS for MathJax + feedback form behavior; removes snippets/glossary wiring.
docs/customization/javascript/mathjax.js Adds MathJax config and re-typesetting hook for SPA navigation.
docs/customization/javascript/extra.js Re-enables Material feedback widget behavior without Google Analytics integration.
docs/tutorials/notebooks/EW_analysis.ipynb Adds Binder link cell and clears prior execution error/output state.
docs/tutorials/notebooks/08_2patch_SIR_wbirths_correlation.ipynb Adds Binder link and clears notebook outputs/execution counts.
docs/includes/glossary.md Removes the glossary abbreviation definitions include.

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Comment thread docs/customization/javascript/mathjax.js
Comment thread docs/customization/javascript/mathjax.js Outdated
Comment thread docs/customization/javascript/extra.js
Comment thread docs/customization/javascript/extra.js Outdated
Comment thread mkdocs.yml
@JSchripsema-IDM
JSchripsema-IDM merged commit eb0e74e into laser-base:main Jul 10, 2026
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2 participants