Issues

• Inconsistencies in default parameters

  kundajelab/tfmodisco#133 · Filter by author gtwa-bio opened on Apr 2, 2026

• how to prepare for input files

  kundajelab/tfmodisco#132 · Filter by author BenxiaHu opened on Mar 24, 2026
  1

• ValueError: Window (25) cannot be longer than the sequences

  kundajelab/tfmodisco#131 · Filter by author Aria-D opened on Mar 5, 2026
  1

• Revcomp deactivation

  kundajelab/tfmodisco#130 · Filter by author Kpoumpou opened on Feb 4, 2026

• Why are the results so different between annotating the output of modisco meme with TomTom and using modisco report -i -m motifdatabase.meme?

  kundajelab/tfmodisco#129 · Filter by author biginfor opened on Dec 30, 2025

• "MergeMotifsAcrossRuns.ipynb script cannot be executed."

  kundajelab/tfmodisco#128 · Filter by author biginfor opened on Dec 23, 2025