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Update msbuilder.py #16

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e6bf033
Update msbuilder.py
dtriadis Jun 19, 2025
84828f6
Update msbuilder.py
dtriadis Jun 19, 2025
52d73c9
Merge pull request #1 from dtriadis/dtriadis-patch-1
dtriadis Jun 24, 2025
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8 changes: 4 additions & 4 deletions modelseedpy/core/msbuilder.py
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Original file line number Diff line number Diff line change
Expand Up @@ -443,12 +443,12 @@ def _get_template_reaction_complexes(self, template_reaction):
for role, (triggering, optional) in cpx.roles.items():
rn_norm = normalize_role(role.name)
template_reaction_complexes[cpx.id][role.id] = [
sn,
rn_norm,
triggering,
optional,
set()
if sn not in self.search_name_to_genes
else set(self.search_name_to_genes[sn]),
if rn_norm not in self.search_name_to_genes
else set(self.search_name_to_genes[rn_norm]),
]
return template_reaction_complexes

Expand All @@ -466,7 +466,7 @@ def _build_reaction_complex_gpr_sets2(
complete &= len(complx[3]) > 0 or not complx[1] or complx[2]
if len(complx[3]) > 0:
roles.add(role_id)
role_genes[role_id] = t[3]
role_genes[role_id] = complx[3]
# print(cpx_id, complete, roles)
if len(roles) > 0 and (allow_incomplete_complexes or complete):
complexes[cpx_id] = {}
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