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RNAseq-workflow

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a short snakemake workflow to analyze bulk RNAseq data

GPL-3.0 license

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Name		Name	Last commit message	Last commit date
alignments		alignments
counts		counts
data		data
reference		reference
CODE_OF_CONDUCT.md		CODE_OF_CONDUCT.md
LICENSE		LICENSE
README.md		README.md
Snakefile		Snakefile
create-env.sh		create-env.sh
environment.yml		environment.yml
run_snakemake.sh		run_snakemake.sh

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RNAseq-workflow

a short snakemake workflow to analyze bulk RNAseq data.

run indexing first, use hisat2-build and have the outputs in the reference folder. Edit the hisat2 command accordingly.

About

a short snakemake workflow to analyze bulk RNAseq data

GPL-3.0 license

Code of conduct

0 stars

1 watching

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