Bump github/codeql-action from 4 to 4.37.4 by dependabot[bot] · Pull Request #247 · alpha-unito/streamflow-postgresql

dependabot · 2026-08-04T10:53:54Z

Bumps github/codeql-action from 4 to 4.37.4.

Release notes

Sourced from github/codeql-action's releases.

v4.37.4

This version of the CodeQL Action adds support for the tools input for the codeql-action/init step to be specified using a github-codeql-tools repository property. This feature will gradually be rolled out following the release of this version. Once rolled out, this allows for the CodeQL CLI version that is used in GitHub-managed workflows, such as Default Setup, to be set to a custom value. For example, customers who run into issues with rate limits when a new CodeQL CLI version is released can set the value to toolcache to always use the CodeQL CLI version that is available in the runner toolcache. For Advanced Setup workflows, the value provided for tools in the workflow definition always takes precedence unless the value of the repository property starts with !. #4037

Update default CodeQL bundle version to 2.26.2. #4051

v4.37.3

No user facing changes.

v4.37.2

The new address format for the config-file input that was introduced in CodeQL Action 4.37.0 is now enabled by default. In addition to the format described there, the remote= prefix can now be used to explicitly indicate that the input refers to a remote file. All previous input formats continue to be accepted as well. #4023

The CodeQL Action can now make use of configured private registries in Default Setup to retrieve CodeQL configuration files from remote repositories that require authentication. This will allow customers to store their CodeQL configuration in a single repository that can then be referenced by Default Setup workflows in other repositories. We expect to roll this and other, related changes out to everyone in July. #4007

v4.37.1

Upcoming breaking change: Add a deprecation warning for customers using CodeQL version 2.20.6 and earlier. These versions of CodeQL were discontinued on 1 July 2026 alongside GitHub Enterprise Server 3.16, and will be unsupported by the next minor release of the CodeQL Action. #3956

Update default CodeQL bundle version to 2.26.1. #4019

v4.37.0

Update default CodeQL bundle version to 2.26.0. #3995

In addition to the existing input format, the config-file input for the codeql-action/init step will soon support a new [owner/]repo[@ref][:path] format. All components except the repository name are optional. If omitted, owner defaults to the same owner as the repository the analysis is running for, ref to main, and path to .github/codeql-action.yaml. Support for this format ships in this version of the CodeQL Action, but will only be enabled over the coming weeks. #3973

v4.36.3

No user facing changes.

v4.36.2

Cache CodeQL CLI version information across Actions steps. #3943

Reduce requests while waiting for analysis processing by using exponential backoff when polling SARIF processing status. #3937

Update default CodeQL bundle version to 2.25.6. #3948

v4.36.1

No user facing changes.

v4.36.0

Breaking change: Bump the minimum required CodeQL bundle version to 2.19.4. #3894

Add support for SHA-256 Git object IDs. #3893

Update default CodeQL bundle version to 2.25.5. #3926

v4.35.5

We have improved how the JavaScript bundles for the CodeQL Action are generated to avoid duplication across bundles and reduce the size of the repository by around 70%. This should have no effect on the runtime behaviour of the CodeQL Action. #3899

For performance and accuracy reasons, improved incremental analysis will now only be enabled on a pull request when diff-informed analysis is also enabled for that run. If diff-informed analysis is unavailable (for example, because the PR diff ranges could not be computed), the action will fall back to a full analysis. #3791

If multiple inputs are provided for the GitHub-internal analysis-kinds input, only code-scanning will be enabled. The analysis-kinds input is experimental, for GitHub-internal use only, and may change without notice at any time. #3892

Added an experimental change which, when running a Code Scanning analysis for a PR with improved incremental analysis enabled, prefers CodeQL CLI versions that have a cached overlay-base database for the configured languages. This speeds up analysis for a repository when there is not yet a cached overlay-base database for the latest CLI version. We expect to roll this change out to everyone in May. #3880

v4.35.4

Update default CodeQL bundle version to 2.25.4. #3881

v4.35.3

Upcoming breaking change: Add a deprecation warning for customers using CodeQL version 2.19.3 and earlier. These versions of CodeQL were discontinued on 9 April 2026 alongside GitHub Enterprise Server 3.15, and will be unsupported by the next minor release of the CodeQL Action. #3837

Configurations for private registries that use Cloudsmith or GCP OIDC are now accepted. #3850

Best-effort connection tests for private registries now use GET requests instead of HEAD for better compatibility with various registry implementations. For NuGet feeds, the test is now always performed against the service index. #3853

Fixed a bug where two diagnostics produced within the same millisecond could overwrite each other on disk, causing one of them to be lost. #3852

Update default CodeQL bundle version to 2.25.3. #3865

... (truncated)

Changelog

Sourced from github/codeql-action's changelog.

4.37.4 - 29 Jul 2026

This version of the CodeQL Action adds support for the tools input for the codeql-action/init step to be specified using a github-codeql-tools repository property. This feature will gradually be rolled out following the release of this version. Once rolled out, this allows for the CodeQL CLI version that is used in GitHub-managed workflows, such as Default Setup, to be set to a custom value. For example, customers who run into issues with rate limits when a new CodeQL CLI version is released can set the value to toolcache to always use the CodeQL CLI version that is available in the runner toolcache. For Advanced Setup workflows, the value provided for tools in the workflow definition always takes precedence unless the value of the repository property starts with !. #4037

Update default CodeQL bundle version to 2.26.2. #4051

4.37.3 - 22 Jul 2026

No user facing changes.

4.37.2 - 21 Jul 2026

The new address format for the config-file input that was introduced in CodeQL Action 4.37.0 is now enabled by default. In addition to the format described there, the remote= prefix can now be used to explicitly indicate that the input refers to a remote file. All previous input formats continue to be accepted as well. #4023

The CodeQL Action can now make use of configured private registries in Default Setup to retrieve CodeQL configuration files from remote repositories that require authentication. This will allow customers to store their CodeQL configuration in a single repository that can then be referenced by Default Setup workflows in other repositories. We expect to roll this and other, related changes out to everyone in July. #4007

4.37.1 - 16 Jul 2026

Upcoming breaking change: Add a deprecation warning for customers using CodeQL version 2.20.6 and earlier. These versions of CodeQL were discontinued on 1 July 2026 alongside GitHub Enterprise Server 3.16, and will be unsupported by the next minor release of the CodeQL Action. #3956

Update default CodeQL bundle version to 2.26.1. #4019

4.37.0 - 08 Jul 2026

Update default CodeQL bundle version to 2.26.0. #3995

In addition to the existing input format, the config-file input for the codeql-action/init step will soon support a new [owner/]repo[@ref][:path] format. All components except the repository name are optional. If omitted, owner defaults to the same owner as the repository the analysis is running for, ref to main, and path to .github/codeql-action.yaml. Support for this format ships in this version of the CodeQL Action, but will only be enabled over the coming weeks. #3973

4.36.3 - 01 Jul 2026

No user facing changes.

Commits

18420e3 Merge pull request #4043 from github/mbg/ts/changelog
7e8d897 Merge pull request #4046 from github/mbg/repo-prop/code-quality
2d4c474 Log !analysisKindSupported case
98c05a1 Fix argument validation in rollback-changelog.ts
8289a49 Ignore repository property for unsupported analysis kinds
2a8731c Move config-file computation after determining the analysisKinds
3434fbb Merge pull request #4044 from github/mbg/ff/promote-toolcache
3013ac0 Promote AllowToolcacheInput feature
74b15aa Install JS deps if needed in post-release-mergeback workflow
f00f809 Fix checking keys rather than values
Additional commits viewable in compare view

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Bumps [github/codeql-action](https://github.com/github/codeql-action) from 4 to 4.37.4. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@v4...v4.37.4) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 4.37.4 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>

codecov · 2026-08-04T11:06:53Z

❌ 155 Tests Failed:

Tests completed	Failed	Passed	Skipped
410	155	255	2

View the full list of 155 ❄️ flaky test(s)

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::any_input_param

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.134s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/echo-tool.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out: "hello test env\n"
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#any_input_param
doc: Test Any type input parameter
tags:
- required
- command_line_tool
line: '409'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::any_outputSource_compatibility

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.373s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/any-type-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/any-type-compat.cwl
output:
  output1:
  - hello
  - world
  output2:
  - foo
  - bar
  output3: hello
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#any_outputSource_compatibility
doc: Testing Any type compatibility in outputSource
tags:
- required
- workflow
line: '195'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::booleanflags_cl_noinputbinding

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.283s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bool-empty-inputbinding-job.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bool-empty-inputbinding.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#booleanflags_cl_noinputbinding
doc: Test that boolean flags do not appear on command line if inputBinding is 
  empty and not null
tags:
- required
- command_line_tool
line: '1708'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_basic_generation

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 20.5s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-tool.cwl
output:
  args:
  - bwa
  - mem
  - -t
  - '2'
  - -I
  - 1,2,3,4
  - -m
  - '3'
  - chr20.fa
  - example_human_Illumina.pe_1.fastq
  - example_human_Illumina.pe_2.fastq
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_basic_generation
doc: General test of command line generation
tags:
- required
- command_line_tool
line: '4'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_empty_array_input

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.344s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty-array-job.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty-array-input.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_empty_array_input
doc: Test that empty array input does not add anything to command line
tags:
- required
- command_line_tool
line: '1748'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_gen_arrayofarrays

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.181s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nested-array-job.yml
output:
  echo:
    checksum: sha1$3f786850e387550fdab836ed7e6dc881de23001b
    location: echo.txt
    class: File
    size: 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nested-array.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_gen_arrayofarrays
doc: Test command line generation of array-of-arrays
tags:
- required
- command_line_tool
line: '1242'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_optional_bindings_provided

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.477s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - cat
  - -n
  - hello.txt
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-n-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat1-testcli.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_optional_bindings_provided
doc: Test command line with optional input (provided)
tags:
- required
- command_line_tool
line: '44'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_optional_inputs_missing

Flake rate in main: 20.83% (Passed 114 times, Failed 30 times)

Stack Traces | 0.325s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - cat
  - hello.txt
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat1-testcli.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_optional_inputs_missing
doc: Test command line with optional input (missing)
tags:
- required
- command_line_tool
line: '36'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_any_input_with_file_provided

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.208s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-file.json
output:
  t1: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_any_input_with_file_provided
doc: Test Any parameter with file input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2100'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_any_input_with_integer_provided

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.18s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-int.json
output:
  t1: 7
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_any_input_with_integer_provided
doc: Test Any parameter with integer input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2086'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_any_input_with_mixed_array_provided

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.543s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-array.json
output:
  t1:
  - 1
  - moocow
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_any_input_with_mixed_array_provided
doc: Test Any parameter with array input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2107'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_any_input_with_record_provided

Flake rate in main: 21.68% (Passed 112 times, Failed 31 times)

Stack Traces | 0.103s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-record.json
output:
  t1:
    moo: 1
    cow: 5
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_any_input_with_record_provided
doc: Test Any parameter with record input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2114'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_any_input_with_string_provided

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.259s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-string.json
output:
  t1: '7'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_any_input_with_string_provided
doc: Test Any parameter with string input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2093'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_optional_union_input_file_or_files_with_array_of_one_file_provided

Flake rate in main: 19.86% (Passed 113 times, Failed 28 times)

Stack Traces | 0.201s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-array-one-empty-file.json
output:
  output_file:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    basename: output.txt
    location: Any
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-or-files.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_optional_union_input_file_or_files_with_array_of_one_file_provided
doc: Test input union type or File or File array to a tool with one file in 
  array specified.
tags:
- command_line_tool
- inline_javascript
line: '2030'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_optional_union_input_file_or_files_with_many_files_provided

Flake rate in main: 19.86% (Passed 113 times, Failed 28 times)

Stack Traces | 0.79s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-array-few-files.json
output:
  output_file:
    checksum: sha1$6d1723861ad5a1260f1c3c07c93076c5a215f646
    basename: output.txt
    location: Any
    class: File
    size: 1114
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-or-files.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_optional_union_input_file_or_files_with_many_files_provided
doc: Test input union type or File or File array to a tool with a few files in 
  array specified.
tags:
- command_line_tool
- inline_javascript
line: '2044'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_optional_union_input_file_or_files_with_nothing_provided

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.305s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-null.json
output:
  output_file:
    checksum: sha1$503458abf7614be3fb26d85ff5d8f3e17aa0a552
    basename: output.txt
    location: Any
    class: File
    size: 10
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-or-files.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_optional_union_input_file_or_files_with_nothing_provided
doc: Test input union type or File or File array to a tool with null specified.
tags:
- command_line_tool
- inline_javascript
line: '2072'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_optional_union_input_file_or_files_with_single_file_provided

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.262s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-one-file.json
output:
  output_file:
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    basename: output.txt
    location: Any
    class: File
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-or-files.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_optional_union_input_file_or_files_with_single_file_provided
doc: Test input union type or File or File array to a tool with one file 
  specified.
tags:
- command_line_tool
- inline_javascript
line: '2058'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::default_path_notfound_warning

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.134s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output: {}
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/default_path_job.yml
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/default_path.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#default_path_notfound_warning
doc: Test warning instead of error when default path is not found
tags:
- required
- command_line_tool
line: '1411'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_input_docker

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.116s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_input_docker
doc: Test directory input in Docker
tags:
- required
- command_line_tool
line: '1114'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_input_param_ref

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.446s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_input_param_ref
doc: Test directory input with parameter reference
tags:
- required
- command_line_tool
line: '1101'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_output

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.279s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir3-job.yml
output:
  outdir:
    class: Directory
    listing:
    - class: File
      location: goodbye.txt
      checksum: sha1$dd0a4c4c49ba43004d6611771972b6cf969c1c01
      size: 24
    - class: File
      location: hello.txt
      checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_output
doc: Test directory output
tags:
- required
- command_line_tool
line: '1127'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_secondaryfiles

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.409s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-job.yml
output:
  outlist:
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    size: 20
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_secondaryfiles
doc: Test directories in secondaryFiles
tags:
- required
- command_line_tool
line: '1151'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::docker_json_output_location

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.664s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#docker_json_output_location
doc: Test support for reading cwl.output.json when running in a Docker container
  and just 'location' is provided.
tags:
- shell_command
- command_line_tool
line: '955'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::docker_json_output_path

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 20.5s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#docker_json_output_path
doc: Test support for reading cwl.output.json when running in a Docker container
  and just 'path' is provided.
tags:
- required
- command_line_tool
line: '939'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dockeroutputdir

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.289s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  thing:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: thing
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-output-dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dockeroutputdir
doc: Test dockerOutputDirectory
tags:
- docker
- command_line_tool
line: '1386'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_initial_workdir

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.441s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    size: 20
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir5.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_initial_workdir
doc: Test dynamic initial work dir
tags:
- initial_work_dir
- command_line_tool
line: '1165'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_filesizes

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.827s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-dir-job.yaml
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_filesizes
doc: Test dynamic resource reqs referencing the size of Files inside a Directory
output:
  output:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- command_line_tool
line: '1779'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_inputs

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.354s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-job.yaml
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_inputs
doc: Test dynamic resource reqs referencing inputs
output:
  output:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- command_line_tool
line: '1635'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_wf

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.433s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-job.yaml
doc: Test simple workflow with a dynamic resource requirement
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-workflow.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_wf
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- workflow
line: '1735'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::embedded_subworkflow

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.501s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines10-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#embedded_subworkflow
doc: Test embedded subworkflow
tags:
- subworkflow
- workflow
line: '1299'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::env_home_tmpdir

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.192s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir
doc: Test $HOME and $TMPDIR are set correctly
tags:
- required
- command_line_tool
line: '1254'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::env_home_tmpdir_docker

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.345s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir_docker
doc: Test $HOME and $TMPDIR are set correctly in Docker
tags:
- required
- command_line_tool
line: '1261'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::env_home_tmpdir_docker_no_return_code

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.345s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  results:
    basename: results
    class: File
    checksum: sha1$7d5ca8c0c03e883c56c4eb1ef6f6bb9bccad4d86
    size: 8
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir_docker_no_return_code
doc: Test $HOME and $TMPDIR are set correctly in Docker without using return 
  code
tags:
- required
- command_line_tool
line: '1811'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::envvar_req

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.076s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-tool1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#envvar_req
doc: Test EnvVarRequirement
tags:
- env_var
- command_line_tool
line: '325'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expr_reference_self_noinput

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.455s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stage-unprovided-file.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expr_reference_self_noinput
doc: Test that expression engine does not fail to evaluate reference to self 
  with unprovided input
tags:
- required
- command_line_tool
line: '1718'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.096s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 1
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any
doc: Test default usage of Any in expressions.
tags:
- inline_javascript
- expression_tool
line: '149'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_null

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.169s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 1
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_null
doc: Test explicitly passing null to Any type inputs with default values.
tags:
- inline_javascript
- expression_tool
line: '157'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_nullstring_nodefaultany

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.112s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-tool.cwl
output:
  output: 2
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_nullstring_nodefaultany
doc: Testing the string 'null' does not trip up an Any without a default value.
tags:
- inline_javascript
- expression_tool
line: '187'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_string

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.316s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 2
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_string
doc: Testing the string 'null' does not trip up an Any with a default value.
tags:
- inline_javascript
- expression_tool
line: '165'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_outputEval

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.214s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc2-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_outputEval
doc: Test outputEval to transform output
tags:
- inline_javascript
- command_line_tool
line: '224'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_parseint

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.17s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/parseInt-job.json
output:
  output: 42
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/parseInt-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_parseint
doc: Test ExpressionTool with Javascript engine
tags:
- inline_javascript
- expression_tool
line: '217'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expressionlib_tool_wf_override

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.633s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  out:
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
    location: whatever.txt
    class: File
    size: 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/js-expr-req-wf.cwl#wf
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expressionlib_tool_wf_override
doc: Test that expressionLib requirement of individual tool step overrides 
  expressionLib of workflow.
tags:
- inline_javascript
- workflow
line: '1268'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::exprtool_directory_literal

Flake rate in main: 21.68% (Passed 112 times, Failed 31 times)

Stack Traces | 0.125s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir7.yml
output:
  dir:
    location: a_directory
    class: Directory
    listing:
    - class: File
      location: whale.txt
      checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
      size: 1111
    - class: File
      location: hello.txt
      checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir7.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#exprtool_directory_literal
doc: Test directory literal output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1327'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::exprtool_file_literal

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.145s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  lit:
    location: a_file
    class: File
    checksum: sha1$fea23663b9c8ed71968f86415b5ec091bb111448
    size: 19
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal-ex.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#exprtool_file_literal
doc: Test file literal output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1353'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::exprtool_literal_secondary_file

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.576s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  lit:
    location: a_file
    class: File
    checksum: sha1$a49c4cc1531107fe689606f89c9391db4f8efe15
    size: 21
    secondaryFiles:
    - class: File
      location: b_file
      checksum: sha1$5ff34169047fdff65569f0624c6395799e213826
      size: 21
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal-ex1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#exprtool_literal_secondary_file
doc: Test file literal with a secondary file output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1365'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::fileliteral_input_docker

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.16s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal.yml
output:
  output_file:
    class: File
    checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
    location: output.txt
    size: 18
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-nodocker.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#fileliteral_input_docker
doc: Test file literal as input without Docker
tags:
- required
- command_line_tool
line: '1648'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::filesarray_secondaryfiles

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 1.18s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-array-secondaryfiles-job.json
output:
  bai_list:
    checksum: sha1$081fc0e57d6efa5f75eeb237aab1d04031132be6
    location: fai.list
    class: File
    size: 386
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-array-secondaryfiles.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#filesarray_secondaryfiles
doc: Test required, optional and null secondaryFiles on array of files.
tags:
- docker
- inline_javascript
- command_line_tool
line: '1306'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::format_checking

Flake rate in main: 21.68% (Passed 112 times, Failed 31 times)

Stack Traces | 0.336s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_2330
    size: 1111
    class: File
    checksum: sha1$97fe1b50b4582cebc7d853796ebd62e3e163aa3f
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#format_checking
doc: Test simple format checking.
tags:
- required
- command_line_tool
line: '818'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::format_checking_subclass

Flake rate in main: 17.73% (Passed 116 times, Failed 25 times)

Stack Traces | 6.79s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest2-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_1929
    size: 12010
    class: File
    checksum: sha1$971d88faeda85a796752ecf752b7e2e34f1337ce
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#format_checking_subclass
doc: Test format checking against ontology using subclassOf.
tags:
- required
- command_line_tool
line: '832'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::hints_import

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.449s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/imported-hint.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#hints_import
doc: Test hints with $import
tags:
- required
- command_line_tool
line: '1399'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::hints_unknown_ignored

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.823s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat5-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#hints_unknown_ignored
doc: Test unknown hints are ignored.
tags:
- required
- command_line_tool
line: '500'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_expr

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.249s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/arguments-job.yml
output:
  classfile:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: Hello.class
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/linkfile.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_expr
doc: Test expression in InitialWorkDir listing
tags:
- initial_work_dir
- command_line_tool
line: '1205'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_output

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.528s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/initialworkdirrequirement-docker-out-job.json
output:
  OUTPUT:
    checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
    location: ref.fasta
    secondaryFiles:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      location: ref.fasta.fai
      class: File
      size: 0
    class: File
    size: 12010
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/initialworkdirrequirement-docker-out.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_output
doc: Test output of InitialWorkDir
tags:
- docker
- initial_work_dir
- command_line_tool
line: '1281'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_secondary_files_expr

Flake rate in main: 24.07% (Passed 123 times, Failed 39 times)

Stack Traces | 0.946s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/search-job.json
output:
  outfile:
    class: File
    checksum: sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0
    location: result.txt
    size: 142
  indexedfile:
    location: input.txt
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    secondaryFiles:
    - location: input.txt.idx1
      class: File
      checksum: sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44
      size: 1500
    - location: input.idx2
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx3
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx4
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx5
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.idx6.txt
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: input.txt.idx7
      size: 0
    - checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      class: File
      location: hello.txt
      size: 13
    - class: Directory
      listing:
      - basename: index
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: index
        size: 0
      location: input.txt_idx8
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/search.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_secondary_files_expr
doc: Test InitialWorkDirRequirement linking input files and capturing 
  secondaryFiles on input and output. Also tests the use of a variety of 
  parameter references and expressions in the secondaryFiles field.
tags:
- initial_work_dir
- inline_javascript
- workflow
line: '512'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_trailingnl

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.231s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/string-job.json
output:
  out:
    class: File
    checksum: sha1$6a47aa22b2a9d13a66a24b3ee5eaed95ce4753cf
    location: example.conf
    size: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/iwdr-entry.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_trailingnl
doc: Test if trailing newline is present in file entry in InitialWorkDir
tags:
- initial_work_dir
- command_line_tool
line: '607'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initialworkdir_nesteddir

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.112s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test InitialWorkDirRequirement with a nested directory structure from 
  another step
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  ya_empty:
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: ya
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/iwdr_with_nested_dirs.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initialworkdir_nesteddir
tags:
- initial_work_dir
- workflow
line: '1696'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initialworkpath_output

Flake rate in main: 18.88% (Passed 116 times, Failed 27 times)

Stack Traces | 0.257s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/initialwork-path.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initialworkpath_output
doc: Test that file path in $(inputs) for initialworkdir is in $(outdir).
tags:
- initial_work_dir
- command_line_tool
line: '1528'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initworkdir_expreng_requirements

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.29s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  foo:
    checksum: sha1$63da67422622fbf9251a046d7a34b7ea0fd4fead
    class: File
    location: foo.txt
    size: 22
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/template-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initworkdir_expreng_requirements
doc: Test InitialWorkDirRequirement ExpressionEngineRequirement.engineConfig 
  feature
tags:
- initial_work_dir
- inline_javascript
- command_line_tool
line: '52'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::inline_expressions

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.163s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc4-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#inline_expressions
doc: Test inline expressions
tags:
- inline_javascript
- command_line_tool
line: '619'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::inlinejs_req_expressions

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.284s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - -A
  - '2'
  - -B
  - baz
  - -C
  - '10'
  - '9'
  - '8'
  - '7'
  - '6'
  - '5'
  - '4'
  - '3'
  - '2'
  - '1'
  - -D
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/inline-js.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#inlinejs_req_expressions
doc: Test InlineJavascriptRequirement with multiple expressions in the same tool
tags:
- inline_javascript
- command_line_tool
line: '1418'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::input_dir_inputbinding

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.141s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir6.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_dir_inputbinding
doc: Test directory input with inputBinding
tags:
- shell_command
- command_line_tool
line: '1229'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::input_dir_recurs_copy_writable

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.521s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/recursive-input-directory.yml
output:
  output_dir:
    basename: work_dir
    class: Directory
    listing:
    - basename: a
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/a
      size: 0
    - basename: b
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/b
      size: 0
    - basename: c
      class: Directory
      listing:
      - basename: d
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: work_dir/c/d
        size: 0
      location: work_dir/c
    - basename: e
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/e
      size: 0
    location: work_dir
  test_result:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    class: File
    location: output.txt
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/recursive-input-directory.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_dir_recurs_copy_writable
doc: Test if a writable input directory is recursively copied and writable
tags:
- initial_work_dir
- command_line_tool
line: '1426'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::input_file_literal

Flake rate in main: 21.68% (Passed 112 times, Failed 31 times)

Stack Traces | 0.21s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal.yml
output:
  output_file:
    class: File
    checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
    location: output.txt
    size: 18
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_file_literal
doc: Test file literal as input
tags:
- required
- command_line_tool
line: '1193'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::job_input_secondary_subdirs

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.145s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-subdir-1-job.yml
output:
  outlist:
    checksum: sha1$9d9bc8f5252d39274b5dfbac64216c6e888f5dfc
    size: 14
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#job_input_secondary_subdirs
doc: Test specifying secondaryFiles in subdirectories of the job input document.
tags:
- required
- command_line_tool
line: '1867'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::job_input_subdir_primary_and_secondary_subdirs

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.78s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-subdir-2-job.yml
output:
  outlist:
    checksum: sha1$9d9bc8f5252d39274b5dfbac64216c6e888f5dfc
    size: 14
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#job_input_subdir_primary_and_secondary_subdirs
doc: Test specifying secondaryFiles in same subdirectory of the job input as the
  primary input file.
tags:
- required
- command_line_tool
line: '1881'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::json_output_location_relative

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.296s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#json_output_location_relative
doc: Test support for reading cwl.output.json where 'location' is relative 
  reference to output dir.
tags:
- required
- command_line_tool
line: '986'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::json_output_path_relative

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.492s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#json_output_path_relative
doc: Test support for reading cwl.output.json where 'path' is relative path in 
  output dir.
tags:
- required
- command_line_tool
line: '971'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::metadata

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.632s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output: {}
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/metadata.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#metadata
doc: Test metadata
tags:
- required
- command_line_tool
line: '811'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::multiple_glob_expr_list

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.34s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/abc.json
output:
  files:
  - location: a
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
  - location: b
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
  - location: c
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/glob-expr-list.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#multiple_glob_expr_list
doc: Test support for returning multiple glob patterns from expression
tags:
- required
- command_line_tool
line: '1001'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nameroot_nameext_generated

Flake rate in main: 18.88% (Passed 116 times, Failed 27 times)

Stack Traces | 0.239s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/basename-fields-job.yml
output:
  extFile:
    checksum: sha1$301a72c82a835e1737caf30f94d0eec210c4d9f1
    class: File
    size: 5
    location: Any
    path: Any
  rootFile:
    checksum: sha1$b4a583c391e234cf210e1d576f68f674c8ad7ecd
    class: File
    size: 10
    location: Any
    path: Any
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/basename-fields-test.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nameroot_nameext_generated
doc: Test that nameroot and nameext are generated from basename at execution 
  time by the runner
tags:
- step_input
- workflow
line: '1509'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nameroot_nameext_stdout_expr

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.159s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  b:
    checksum: sha1$c4cfd130e7578714e3eef91c1d6d90e0e0b9db3e
    location: whale.xtx
    class: File
    size: 21
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nameroot.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nameroot_nameext_stdout_expr
doc: Test nameroot/nameext expression in arguments, stdout
tags:
- required
- command_line_tool
line: '1217'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nested_cl_bindings

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.451s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - tmap
  - mapall
  - stage1
  - map1
  - --min-seq-length
  - '20'
  - map2
  - --min-seq-length
  - '20'
  - stage2
  - map1
  - --max-seq-length
  - '20'
  - --min-seq-length
  - '10'
  - --seed-length
  - '16'
  - map2
  - --max-seed-hits
  - '-1'
  - --max-seq-length
  - '20'
  - --min-seq-length
  - '10'
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/tmap-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/tmap-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_cl_bindings
doc: Test nested command line bindings
tags:
- schema_def
- command_line_tool
line: '26'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nested_prefixes_arrays

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.324s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - bwa
  - mem
  - chr20.fa
  - -XXX
  - -YYY
  - example_human_Illumina.pe_1.fastq
  - -YYY
  - example_human_Illumina.pe_2.fastq
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/binding-test.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_prefixes_arrays
doc: Test nested prefixes with arrays
tags:
- required
- command_line_tool
line: '15'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nested_workflow

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.581s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines8-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_workflow
doc: Test nested workflow
tags:
- subworkflow
- workflow
- inline_javascript
line: '417'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::null_missing_params

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.326s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  out: "t\n"
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-defined.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#null_missing_params
doc: Test that missing parameters are null (not undefined) in expression
tags:
- inline_javascript
- command_line_tool
line: '1481'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::optional_input_scatter

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.167s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/optional-input-scatter.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job1.json
output:
  out:
  - foo one
  - foo two
  - foo three
  - foo four
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#optional_input_scatter
doc: "Test optional step input with single scatter parameter\n"
tags:
- scatter
- workflow
line: '1974'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::outputbinding_glob_sorted

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.109s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test that OutputBinding.glob is sorted as specified by POSIX
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#outputbinding_glob_sorted
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/glob_test.cwl
output:
  letters:
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: a
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: b
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: c
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: w
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: x
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: y
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: z
    class: File
    size: 0
tags:
- required
- command_line_tool
line: '1660'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::packed_import_schema

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.589s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/import_schema-def_job.yml
output:
  output_bam:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    basename: a.bam
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/import_schema-def_packed.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#packed_import_schema
doc: SchemaDefRequirement with $import, and packed
tags:
- schema_def
- workflow
line: '1855'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::param_evaluation_expr

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.235s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  t1:
    bar:
      b az: 2
      b"az:
      b'az: 1
      baz: zab1
      buz:
      - a
      - b
      - c
  t10: 1
  t11: 1
  t12:
  t13: -zab1
  t14: -zab1
  t15: -zab1
  t16: -zab1
  t17: zab1 zab1
  t18: zab1 zab1
  t19: zab1 zab1
  t2:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t20: zab1 zab1
  t21: 2 2
  t22: true true
  t23: true true
  t24: null null
  t25: b
  t26: b b
  t3:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t4:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t5: zab1
  t6: zab1
  t7: zab1
  t8: zab1
  t9: 2
  t27:
  t28: 3
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/params2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_evaluation_expr
doc: Test parameter evaluation, with support for JS expressions
tags:
- inline_javascript
- command_line_tool
line: '732'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::param_evaluation_noexpr

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.308s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  t1:
    bar:
      b az: 2
      b"az:
      b'az: 1
      baz: zab1
      buz:
      - a
      - b
      - c
  t10: 1
  t11: 1
  t12:
  t13: -zab1
  t14: -zab1
  t15: -zab1
  t16: -zab1
  t17: zab1 zab1
  t18: zab1 zab1
  t19: zab1 zab1
  t2:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t20: zab1 zab1
  t21: 2 2
  t22: true true
  t23: true true
  t24: null null
  t25: b
  t26: b b
  t3:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t4:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t5: zab1
  t6: zab1
  t7: zab1
  t8: zab1
  t9: 2
  t27:
  t28: 3
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/params.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_evaluation_noexpr
doc: Test parameter evaluation, no support for JS expressions
tags:
- required
- command_line_tool
line: '654'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::param_notnull_expr

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.078s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  out: "f\n"
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-defined.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_notnull_expr
doc: Test that provided parameter is not null in expression
tags:
- inline_javascript
- command_line_tool
line: '1489'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::rename

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.149s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/rename-job.json
output:
  outfile:
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    location: fish.txt
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/rename.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#rename
doc: Test InitialWorkDirRequirement with expression in filename.
tags:
- initial_work_dir
- command_line_tool
line: '594'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::requirement_override_hints

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.325s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out:
    class: File
    checksum: sha1$cdc1e84968261d6a7575b5305945471f8be199b6
    location: out
    size: 9
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_override_hints
doc: Test requirements override hints
tags:
- env_var
- workflow
line: '436'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::requirement_priority

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.1s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_priority
doc: Test requirement priority
tags:
- env_var
- workflow
line: '424'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::requirement_workflow_steps

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.515s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
  out:
    class: File
    checksum: sha1$cdc1e84968261d6a7575b5305945471f8be199b6
    location: out
    size: 9
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_workflow_steps
doc: Test requirements on workflow steps
tags:
- env_var
- workflow
line: '448'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::resreq_step_overrides_wf

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.442s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/steplevel-resreq.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#resreq_step_overrides_wf
doc: Test that ResourceRequirement on a step level redefines requirement on the 
  workflow level
output:
  out:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$e5fa44f2b31c1fb553b6021e7360d07d5d91ff5e
tags:
- resource
- workflow
line: '1757'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::scatter_all_input_defaults

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.213s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  result:
  - class: File
    checksum: sha1$4bb9bb2748a4380f12c039a9c2268115b816a6de
  - class: File
    checksum: sha1$cf42ecac010c90a72257a573a5ce7efb7d6f0e08
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-defaults.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#scatter_all_input_defaults
doc: Test workflow scatter with single scatter parameter and two default inputs
tags:
- scatter
- workflow
line: '1831'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::scatter_embedded_subworkflow

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.348s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines18-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#scatter_embedded_subworkflow
doc: Test simple scatter over an embedded subworkflow
tags:
- workflow
- inline_javascript
line: '1895'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::scatter_multi_input_embedded_subworkflow

Flake rate in main: 17.73% (Passed 116 times, Failed 25 times)

Stack Traces | 0.352s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines14-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#scatter_multi_input_embedded_subworkflow
doc: Test simple multiple input scatter over an embedded subworkflow
tags:
- workflow
- scatter
- subworkflow
- multiple_input
- inline_javascript
line: '1903'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::schemadef_req_tool_param

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.182s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-job.json
output:
  output:
    location: output.txt
    size: 12
    class: File
    checksum: sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#schemadef_req_tool_param
doc: Test SchemaDefRequirement definition used in tool parameter
tags:
- schema_def
- command_line_tool
line: '628'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::schemadef_req_wf_param

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.291s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-job.json
output:
  output:
    location: output.txt
    size: 12
    class: File
    checksum: sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#schemadef_req_wf_param
doc: Test SchemaDefRequirement definition used in workflow parameter
tags:
- schema_def
- workflow
line: '641'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.3s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect
doc: Test command line with stderr redirection
output:
  output_file:
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
    location: error.txt
tags:
- required
- command_line_tool
line: '101'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect_mediumcut

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.191s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  output_file:
    class: File
    size: 4
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    location: std.err
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr-mediumcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect_mediumcut
doc: Test command line with stderr redirection, named brief syntax
tags:
- required
- command_line_tool
line: '125'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect_shortcut

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.174s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr-shortcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect_shortcut
doc: Test command line with stderr redirection, brief syntax
output:
  output_file:
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
    location: Any
tags:
- required
- command_line_tool
line: '113'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdinout_redirect

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.47s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output:
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    class: File
    location: output
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdinout_redirect
doc: Test command execution in with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '205'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdinout_redirect_docker

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.136s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_txt:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat4-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdinout_redirect_docker
doc: Test command execution in Docker with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '137'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_docker

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.105s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_docker
doc: Test command execution in Docker with stdout redirection
tags:
- docker
- command_line_tool
line: '65'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_mediumcut_docker

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.189s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: cat-out
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool-mediumcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_mediumcut_docker
doc: Test command execution in Docker with mediumcut stdout redirection
tags:
- docker
- command_line_tool
line: '89'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_shortcut_docker

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.211s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool-shortcut.cwl
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: Any
    size: 13
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_shortcut_docker
doc: Test command execution in Docker with shortcut stdout redirection
tags:
- docker
- command_line_tool
line: '77'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value

Flake rate in main: 21.68% (Passed 112 times, Failed 31 times)

Stack Traces | 0.503s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines9-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value
doc: Test default value on step input parameter
tags:
- inline_javascript
- workflow
line: '460'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_nosource

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 20.6s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_nosource
doc: Test use default value on step input parameter with empty source
tags:
- inline_javascript
- workflow
line: '467'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_nullsource

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.194s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file1-null.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_nullsource
doc: Test use default value on step input parameter with null source
tags:
- inline_javascript
- workflow
line: '474'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_overriden

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.314s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  count_output: 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_overriden
doc: Test default value on step input parameter overridden by provided source
tags:
- inline_javascript
- workflow
line: '481'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::success_codes

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.385s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/exit-success.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#success_codes
doc: Test successCodes
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tags:
- required
- command_line_tool
line: '1728'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::valuefrom_constant_overrides_inputs

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.508s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/array-of-strings-job.yml
output:
  args:
  - replacementValue
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/valueFrom-constant.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#valuefrom_constant_overrides_inputs
doc: Test valueFrom with constant value overriding provided array inputs
tags:
- required
- command_line_tool
line: '1770'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_compound_doc

Flake rate in main: 19.58% (Passed 115 times, Failed 28 times)

Stack Traces | 0.921s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-job.json
output:
  output:
    class: File
    checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
    location: output.txt
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-packed.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_compound_doc
doc: Test compound workflow document
tags:
- required
- workflow
line: '1497'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_default_tool_default

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.34s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  default_output: workflow_default
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/echo-wf-default.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_default_tool_default
doc: Test that workflow defaults override tool defaults
tags:
- required
- workflow
line: '318'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_input_default_missing

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.233s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  count_output: 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines5-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_input_default_missing
doc: Test workflow with default value for input parameter (missing)
tags:
- inline_javascript
- workflow
line: '304'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_input_default_provided

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.35s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines5-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_input_default_provided
doc: Test workflow with default value for input parameter (provided)
tags:
- inline_javascript
- workflow
line: '311'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_multiplesources_multipletypes

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.73s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/sum-job.json
output:
  result: 12
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/sum-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_multiplesources_multipletypes
doc: Test step input with multiple sources with multiple types
tags:
- step_input
- inline_javascript
- multiple_input
- workflow
line: '1545'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_dotproduct_twoempty

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.469s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job4.json
output:
  out: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf4.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_dotproduct_twoempty
doc: Test workflow scatter with two empty scatter parameters and dotproduct join
  method
tags:
- scatter
- workflow
line: '401'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_emptylist

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.382s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job1.json
output:
  out: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_emptylist
doc: Test workflow scatter with single empty list parameter
tags:
- scatter
- workflow
line: '369'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_flat_crossproduct_oneempty

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.858s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job2.json
output:
  out: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_flat_crossproduct_oneempty
doc: Test workflow scatter with two scatter parameters, one of which is empty 
  and flat_crossproduct join method
tags:
- scatter
- workflow
line: '393'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_nested_crossproduct_firstempty

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.352s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job3.json
output:
  out: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_nested_crossproduct_firstempty
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method with first list empty
tags:
- scatter
- workflow
line: '385'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_nested_crossproduct_secondempty

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.255s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job2.json
output:
  out:
  - []
  - []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_nested_crossproduct_secondempty
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method with second list empty
tags:
- scatter
- workflow
line: '377'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valueFrom

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.402s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job3.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf6.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valueFrom
doc: Test valueFrom eval on scattered input parameter
output:
  out_message:
  - checksum: sha1$98030575f6fc40e5021be5a8803a6bef94aee11f
    location: Any
    class: File
    size: 16
  - checksum: sha1$edcacd50778d98ae113015406b3195c165059dd8
    location: Any
    class: File
    size: 16
tags:
- scatter
- step_input
- workflow
line: '1066'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valuefrom

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.192s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo one two
  - foo one three
  - foo one four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valuefrom
doc: Test workflow scatter with single scatter parameter and two valueFrom on 
  step input (first and current el)
tags:
- scatter
- step_input
- workflow
line: '1026'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valuefrom_inputs

Flake rate in main: 19.58% (Passed 115 times, Failed 28 times)

Stack Traces | 0.433s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo one two
  - foo one three
  - foo one four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-inputs-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valuefrom_inputs
doc: Test workflow scatter with single scatter parameter and two valueFrom using
  $inputs (first and current el)
tags:
- scatter
- step_input
- workflow
line: '1823'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valuefrom_twice_current_el

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.189s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo two two
  - foo three three
  - foo four four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf5.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valuefrom_twice_current_el
doc: Test workflow scatter with single scatter parameter and two valueFrom on 
  step input (current el twice)
tags:
- scatter
- step_input
- workflow
line: '1058'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_single_param

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.196s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job1.json
output:
  out:
  - foo one
  - foo two
  - foo three
  - foo four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_single_param
doc: Test workflow scatter with single scatter parameter
tags:
- scatter
- workflow
line: '337'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_two_dotproduct

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.414s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
  out:
  - foo one three
  - foo two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf4.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_dotproduct
doc: Test workflow scatter with two scatter parameters and dotproduct join 
  method
tags:
- scatter
- workflow
line: '361'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_two_flat_crossproduct

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.353s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
  out:
  - foo one three
  - foo one four
  - foo two three
  - foo two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_flat_crossproduct
doc: Test workflow scatter with two scatter parameters and flat_crossproduct 
  join method
tags:
- scatter
- workflow
line: '353'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_two_nested_crossproduct

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.328s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
  out:
  - - foo one three
    - foo one four
  - - foo two three
    - foo two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_nested_crossproduct
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method
tags:
- scatter
- workflow
line: '345'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_twopar_oneinput_flattenedmerge

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.233s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-job.json
output:
  count_output: 34
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines12-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twopar_oneinput_flattenedmerge
doc: Test single step workflow with Scatter step and two data links connected to
  same input, flattened merge behavior. Workflow inputs are set as list
tags:
- multiple_input
- inline_javascript
- workflow
line: '1535'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_twoparam_dotproduct_valuefrom

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.398s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
  out:
  - foo one one three
  - foo one two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf4.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_dotproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and dotproduct join 
  method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1050'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_twoparam_flat_crossproduct_valuefrom

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.573s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
  out:
  - foo one one three
  - foo one one four
  - foo one two three
  - foo one two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf3.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_flat_crossproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and flat_crossproduct 
  join method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1042'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_twoparam_nested_crossproduct_valuefrom

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.272s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
  out:
  - - foo one one three
    - foo one one four
  - - foo one two three
    - foo one two four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_nested_crossproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1034'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_valuefrom_default

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 1.08s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-job.json
output:
  out1:
  - foo 1
  - foo 2
  - foo 3
  - foo 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-default.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_valuefrom_default
doc: Test workflow scatter with single scatter parameter, a valueFrom in the 
  WorkflowStep and a default value inside the step
tags:
- scatter
- step_input
- workflow
line: '1847'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_simple

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.324s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-job.json
output:
  output:
    class: File
    checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
    location: output.txt
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_simple
doc: Test simple workflow
tags:
- required
- workflow
line: '488'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_step_connect_undeclared_param

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.934s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/pass-unconnected.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_step_connect_undeclared_param
doc: Test that it is not an error to connect a parameter to a workflow step, 
  even if the parameter doesn't appear in the `run` process inputs.
output:
  out: "hello inp1\n"
tags:
- required
- workflow
line: '1792'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_two_inputfiles_namecollision

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.516s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/conflict-job.json
output:
  fileout:
    location: out.txt
    checksum: sha1$a2d8d6e7b28295dc9977dc3bdb652ddd480995f0
    class: File
    size: 25
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/conflict-wf.cwl#collision
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_two_inputfiles_namecollision
doc: Test workflow two input files with same name.
tags:
- required
- workflow
line: '1087'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_expressiontool

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.416s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines2-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_expressiontool
doc: Test two step workflow with inline tools
tags:
- inline_javascript
- workflow
line: '238'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_nomultiple

Flake rate in main: 21.68% (Passed 112 times, Failed 31 times)

Stack Traces | 0.298s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines13-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_nomultiple
doc: Test when step source is a single-item list and there is no linkMerge, then
  it not wrapped in a list, and that MultipleInputFeatureRequirement is not 
  required.
tags:
- inline_javascript
- workflow
line: '283'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_nomultiple_merge_nested

Flake rate in main: 22.38% (Passed 111 times, Failed 32 times)

Stack Traces | 0.226s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines19-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_nomultiple_merge_nested
doc: Test when step source is a single-item list and linkMerge is listed, then 
  it is wrapped in a list.
tags:
- inline_javascript
- workflow
line: '294'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_parseInt

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.614s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines1-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_parseInt
doc: Test two step workflow with imported tools
tags:
- inline_javascript
- workflow
line: '231'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_scatter

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 20.5s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter
doc: Test single step workflow with Scatter step
tags:
- scatter
- inline_javascript
- workflow
line: '245'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_scatter_multiple_flattened

Flake rate in main: 21.68% (Passed 112 times, Failed 31 times)

Stack Traces | 0.57s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-job.json
output:
  count_output: 34
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines7-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_flattened
doc: Test single step workflow with Scatter step and two data links connected to
  same input, flattened merge behavior
tags:
- multiple_input
- inline_javascript
- workflow
line: '273'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_scatter_multiple_merge

Flake rate in main: 20.28% (Passed 114 times, Failed 29 times)

Stack Traces | 0.331s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_merge
doc: Test single step workflow with Scatter step and two data links connected to
  same input, default merge behavior
tags:
- scatter
- multiple_input
- inline_javascript
- workflow
line: '253'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_scatter_multiple_nested

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.527s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-job.json
output:
  count_output:
  - 32
  - 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_nested
doc: Test single step workflow with Scatter step and two data links connected to
  same input, nested merge behavior
tags:
- scatter
- multiple_input
- inline_javascript
- workflow
line: '263'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_file_provided

Flake rate in main: 18.88% (Passed 116 times, Failed 27 times)

Stack Traces | 0.197s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-file.json
output:
  t1: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_file_provided
doc: Test Any parameter with file input to a workflow
tags:
- workflow
- inline_javascript
line: '2135'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_integer_provided

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.476s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-int.json
output:
  t1: 7
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_integer_provided
doc: Test Any parameter with integer input to a workflow
tags:
- workflow
- inline_javascript
line: '2121'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_mixed_array_provided

Flake rate in main: 18.88% (Passed 116 times, Failed 27 times)

Stack Traces | 0.204s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-array.json
output:
  t1:
  - 1
  - moocow
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_mixed_array_provided
doc: Test Any parameter with array input to a workflow
tags:
- workflow
- inline_javascript
line: '2142'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_record_provided

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.837s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-record.json
output:
  t1:
    moo: 1
    cow: 5
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_record_provided
doc: Test Any parameter with record input to a tool
tags:
- workflow
- inline_javascript
line: '2149'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_string_provided

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.65s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-string.json
output:
  t1: '7'
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_string_provided
doc: Test Any parameter with string input to a workflow
tags:
- workflow
- inline_javascript
line: '2128'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_embedded_subworkflow_embedded_subsubworkflow

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.802s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines15-wf.cwl
doc: Test twice nested subworkflow
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_embedded_subsubworkflow
tags:
- workflow
- subworkflow
- inline_javascript
line: '1911'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_embedded_subworkflow_with_tool_and_subsubworkflow

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.147s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines16-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_with_tool_and_subsubworkflow
doc: Test subworkflow of mixed depth with tool first
tags:
- workflow
- subworkflow
- inline_javascript
line: '1918'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_file_input_default_specified

Flake rate in main: 19.86% (Passed 113 times, Failed 28 times)

Stack Traces | 0.251s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/default_path_job.yml
output:
  o:
    class: File
    basename: output
    location: Any
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_file_input_default_specified
doc: Test File input with default specified to workflow
tags:
- workflow
line: '2017'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_file_input_default_unspecified

Flake rate in main: 19.86% (Passed 113 times, Failed 28 times)

Stack Traces | 0.875s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o:
    class: File
    basename: output
    size: 1111
    location: Any
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_file_input_default_unspecified
doc: Test File input with default unspecified to workflow
tags:
- workflow
line: '2004'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_default_and_tool_integer_input_default

Flake rate in main: 19.86% (Passed 113 times, Failed 28 times)

Stack Traces | 0.812s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-default-tool-and-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_default_and_tool_integer_input_default
doc: Test default integer tool and workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1997'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_default_specified

Flake rate in main: 19.86% (Passed 113 times, Failed 28 times)

Stack Traces | 0.667s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int.json
output:
  o: 250
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_default_specified
doc: Test default integer workflow inputs (specified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1983'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_default_unspecified

Flake rate in main: 19.86% (Passed 113 times, Failed 28 times)

Stack Traces | 0.409s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: 128
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_default_unspecified
doc: Test default integer workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1990'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_optional_specified

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.407s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int.json
output:
  o: 250
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-optional-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_optional_specified
doc: Test optional integer workflow inputs (specified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1960'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_optional_unspecified

Flake rate in main: 19.15% (Passed 114 times, Failed 27 times)

Stack Traces | 0.476s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-optional-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_optional_unspecified
doc: Test optional integer workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1967'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_union_default_input_unspecified

Flake rate in main: 18.44% (Passed 115 times, Failed 26 times)

Stack Traces | 0.19s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: the default value
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-union-input-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_union_default_input_unspecified
doc: Test union type input to workflow with default unspecified
tags:
- workflow
- inline_javascript
- expression_tool
line: '2156'

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::writable_stagedfiles

Flake rate in main: 20.98% (Passed 113 times, Failed 30 times)

Stack Traces | 0.489s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stagefile-job.yml
output:
  outfile:
    checksum: sha1$b769c7b2e316edd4b5eb2d24799b2c1f9d8c86e6
    size: 1111
    location: bob.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stagefile.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#writable_stagedfiles
doc: Test writable staged files.
tags:
- initial_work_dir
- command_line_tool
line: '1179'

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dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Aug 4, 2026

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Bump github/codeql-action from 4 to 4.37.3 #245

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Bump github/codeql-action from 4 to 4.37.4 - #247

Bump github/codeql-action from 4 to 4.37.4#247
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dependabot Bot commented on behalf of github Aug 4, 2026

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