Fragmenting Genome Sequences by Coding Regions to Improve Performance of the AmpliDiff Algorithm for Large Genomes

This repository contains a modified version of AmpliDiff to support scaling to larger genomes. This repository was created for the Research Project 2023-2024 of TU Delft.

Code and datasets

• The pre-processing algorithm can be found in the PreprocessingCodingRegion folder.
• The datasets and parameters used in the abundance estimation can be found in the Datasets folder.

The AmpliDiff README is renamed to README_AmpliDiff.md