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@RI-imaging

Refractive Index Imaging

software libraries for refractive index imaging in 2D and in 3D

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  1. ODTbrain ODTbrain Public

    Python library for diffraction tomography with the Born and Rytov approximations

    Python 58 13

  2. nrefocus nrefocus Public

    python library for numerical focusing (refocusing, autofocusing) of complex wave fields

    Python 11 4

  3. qpimage qpimage Public

    Python library for manipulating quantitative phase images

    Python 1 4

  4. qpsphere qpsphere Public

    Python library for spheres in quantitative phase imaging

    Python 6 2

  5. qpformat qpformat Public

    Python library for opening quantitative phase imaging file formats

    Python 1 2

  6. DryMass DryMass Public

    manipulation and analysis of phase microscopy data

    Python 3 1

Repositories

Showing 10 of 17 repositories
  • qpretrieve Public

    Phase retrieval from holograms

    RI-imaging/qpretrieve's past year of commit activity
    Python 6 MIT 3 6 1 Updated Jul 8, 2026
  • xpunwrap Public

    Phase Unwrapping on GPU (and CPU), with Python

    RI-imaging/xpunwrap's past year of commit activity
    Python 0 MIT 0 2 0 Updated Jul 7, 2026
  • nrefocus Public

    python library for numerical focusing (refocusing, autofocusing) of complex wave fields

    RI-imaging/nrefocus's past year of commit activity
    Python 11 BSD-3-Clause 4 9 0 Updated Jun 29, 2026
  • radontea Public

    python library for tomographic image reconstruction

    RI-imaging/radontea's past year of commit activity
    Python 17 BSD-3-Clause 8 1 0 Updated Nov 3, 2025
  • ODTbrain Public

    Python library for diffraction tomography with the Born and Rytov approximations

    RI-imaging/ODTbrain's past year of commit activity
    Python 58 BSD-3-Clause 13 7 0 Updated Mar 31, 2025
  • qpformat Public

    Python library for opening quantitative phase imaging file formats

    RI-imaging/qpformat's past year of commit activity
    Python 1 MIT 2 3 0 Updated Feb 7, 2025
  • flimage Public

    Python library for manipulating fluorescence microscopy series data

    RI-imaging/flimage's past year of commit activity
    Python 0 MIT 2 1 0 Updated Feb 7, 2025
  • CellReel Public

    graphical user interface for refractive index and fluorescence tomography

    RI-imaging/CellReel's past year of commit activity
    Python 1 GPL-3.0 0 15 0 Updated Feb 6, 2025
  • cellsino Public

    Python library for generating sinograms (phase and fluorescence) of cell phantoms for testing tomographic reconstruction algorithms

    RI-imaging/cellsino's past year of commit activity
    Python 4 BSD-3-Clause 2 4 0 Updated Feb 6, 2025
  • DryMass Public

    manipulation and analysis of phase microscopy data

    RI-imaging/DryMass's past year of commit activity
    Python 3 MIT 1 5 (1 issue needs help) 0 Updated Feb 6, 2025
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