All pull requests

Pull requests

• pwiz: Fixed wiff2 reader handling of triple-quad ProductIon and Q1MI scans (26.1.1 C++ backport of #4907)

  pwiz
  #4912·bspratt opened Oct 23, 2026Member·2 tasks done·

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  2

• pwiz: Fixed wiff2 reader handling of triple-quad ProductIon and Q1MI scans

  pwiz
  #4907·bspratt opened Oct 23, 2026Member·3 tasks done·

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  5

• skyline: Fixed tutorial screenshot regressions and updated screenshots (26.1.1)

  skyline
  #4896·brendanx67 opened Oct 22, 2026Member·2 of 3 tasks·

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• skyline: Added anti-aliasing for rotated ZedGraph text

  skyline
  #4892·bspratt opened Oct 21, 2026Member·3 tasks done·

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  1

• skyline: Added waters_connect sample set and id support to the command line

  skyline
  #4891·chambm opened Oct 21, 2026Member·3 tasks done·

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  1

• skyline: Fixed DIA import failing when a spill file's MaxTime equals a scan time

  Cherry pick to releaseskyline
  #4889·maccoss opened Oct 21, 2026Contributor·5 tasks done·

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  1

• skyline: Added the IconBuilder tool and embedded per-DPI icon resources

  skyline
  #4887·rita-gwen opened Oct 21, 2026Contributor·4 tasks done·

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  1

• skyline: Added the AsSmallMolecule test variants to the Skyline per-commit and tutorial CI runs

  skyline
  #4881·chambm opened Oct 20, 2026Member·2 tasks·

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  1

• skyline: Added retries for transient network failures in tool downloads

  skyline
  #4851·chambm opened Oct 15, 2026Member·4 tasks done·

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  1

• skyline: Added icon size arguments to the DevTools ImageExtractor

  skyline
  #4839·rita-gwen opened Oct 13, 2026Contributor·5 tasks done·

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  2

• pwiz: Fixed msconvert option parsing and help regeneration issues from code review

  pwiz
  #4836·chambm opened Oct 13, 2026Member·5 tasks done·

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  8

• osprey: Fixed reported protein-group q-values being far below the true error rate

  osprey
  #4823·nickshulman opened Oct 11, 2026Contributor·2 of 3 tasks·

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  5

• skyline: Added observed ion mobility and CCS to chromatogram extraction

  skyline
  #4787·bspratt opened Oct 6, 2026Member·5 of 6 tasks·

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  1

  17

• skyline: Fixed intermittent MSB3021 copy failures in the Skyline build and code inspection

  skyline
  #4769·chambm opened Oct 5, 2026Member·4 of 5 tasks·

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  3

• pwiz: Fixed VendorPinsGenerator compiling concurrently for each Vendor.Common configuration

  pwiz
  #4724·maccoss opened Sep 28, 2026Contributor·4 tasks done·

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  7

• osprey: Added demultiplexing of overlapping-window DIA to Osprey

  osprey
  #4710·maccoss opened Sep 25, 2026Contributor·8 tasks done·

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  8

• skyline: Changed waters_connect CE optimization to read actual CE values

  enhancementskylinevendor
  #4683·rita-gwen opened Sep 18, 2026Contributor·6 tasks done·

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  1

  4

• skyline: Made the .NET build of Skyline system-DPI-aware (issue #4599)

  skyline
  #4602·rita-gwen opened Aug 21, 2026Contributor·10 tasks done·

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  10

• Proteo wizard master

  #4574·kpnovoselov opened Aug 13, 2026·

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  10

• Allow cancelling "Export Report" from JSON Tool Service API

  #4546·nickshulman opened Aug 7, 2026Contributor·

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• Open document directly from .sky.zip without extracting if necessary files are uncompressed

  #4426·nickshulman opened Jul 16, 2026Contributor·4 tasks done·

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  19

• Filter chromatogram extraction on uninterpreted mzML CV/user parameters

  #4422·bspratt opened Jul 15, 2026Member·7 tasks done·

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  47

• Site-determining ion assistant for modification localization

  #4391·rita-gwen opened Jul 8, 2026Contributor·5 tasks done·

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  5

• pwiz-sharp: added mzPeak format support (read, write, msconvert)

  #4311·chambm opened Jun 17, 2026Member·2 tasks done·

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  8

• skyline: Added Sage DDA search engine to Skyline

  skyline
  #4303·chambm opened Jun 15, 2026Member·2 tasks done·

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  10