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[WIP] Don't unghost plugins when loading initial state
If a plugin is explicitly active then it should already be unghosted, and otherwise isn't actually active.
If a plugin is implicitly active, then it's only actually implicitly active if the unghosted plugin exists.
If a plugin is inactive then it can be ghosted or not.
WIP because what I've implemented doesn't match the text above, but I'm also not sure that's the correct approach, it could be confusing since the ghost extension is stripped, so you could see a plugin in the load order that seems like it should be active, but it isn't because it's actually ghosted.
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