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Peptide outlier guard and decoupled deff gate - #149

Merged

ammarcsj merged 2 commits into

mainfrom

revision-v5-aggregation-fixes

Oct 1, 2026

Merged

Peptide outlier guard and decoupled deff gate#149
ammarcsj merged 2 commits into
mainfrom
revision-v5-aggregation-fixes

Commits on Aug 21, 2026
- Never let peptide outlier filtering increase protein significance
  
  ammarcsj
  and
  claude
  committed
  a686d4c
Commits on Oct 1, 2026
- Decouple deff gate from pruning tolerance; default tolerance 0.08
  
  ammarcsj
  and
  claude
  committed
  aa50ad9