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Merge stacked feature branches into main - #139

Merged

ammarcsj merged 26 commits into

mainfrom

add_quant_reader_and_table_updates

May 25, 2026

Merged

Merge stacked feature branches into main#139
ammarcsj merged 26 commits into
mainfrom
add_quant_reader_and_table_updates

Commits on May 25, 2026
- Add graphviz pure-Python fallback layout for treeviz
  
  ammarcsj
  and
  claude
  committed
  f868690
- Minor fcviz cleanup
  
  ammarcsj
  and
  claude
  committed
  6b6172d
- Update quant reader config with new input types
  
  ammarcsj
  and
  claude
  committed
  ff6ba0e
- Update alphadia reader
  
  ammarcsj
  and
  claude
  committed
  fa84b3d
- Add split ion backgrounds and new z-aggregation modes to background distributions
  ammarcsj
  committed
  3e1f1ea
- Add missing value clustering updates
  ammarcsj
  committed
  46dfd6b
- Add variance predictor module and tests
  ammarcsj
  committed
  c18a375
- Add intensity summarization module and tests
  ammarcsj
  committed
  c5b30a6
- Add ICC correction module and tests
  ammarcsj
  committed
  d81b6d8
- Add residual decorrelation module and tests
  ammarcsj
  committed
  09ca634
- Update cluster utils with new aggregation modes and fragment filtering
  ammarcsj
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  6633f16
- Update config variables for new features
  ammarcsj
  committed
  e420be3
- Wire new features into condpair analysis
  ammarcsj
  committed
  c4941d9
- Update run_pipeline, dashboard and PTM wiring
  ammarcsj
  committed
  7feed67
- Add module docstring, structure overview and inline comments to residual_decorrelation
  ammarcsj
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  a9b9758
- Add .claude/settings.local.json to .gitignore
  ammarcsj
  committed
  b018098
- Restore notebook plotting functions removed by dead code cleanup
  ammarcsj
  committed
  01fc591
- Merge pull request #130 from MannLabs/add_background_split_and_z_aggregation
  ammarcsj
  authored
  c277629
- Merge pull request #131 from MannLabs/add_variance_predictor
  ammarcsj
  authored
  977cc95
- Merge pull request #132 from MannLabs/add_intensity_summarization
  ammarcsj
  authored
  2e9a75d
- Merge pull request #133 from MannLabs/add_icc_correction
  ammarcsj
  authored
  9701197
- Merge pull request #134 from MannLabs/add_residual_decorrelation
  ammarcsj
  authored
  af965ff
- Merge pull request #135 from MannLabs/wire_new_aggregation_features
  ammarcsj
  authored
  050d664
- Merge pull request #136 from MannLabs/document_residual_decorrelation
  ammarcsj
  authored
  a3aa371
- Merge pull request #137 from MannLabs/fix_notebook_plotting_functions
  ammarcsj
  authored
  c70ab0e
- Resolve merge conflict: take main's version of cluster_missingval.py
  ammarcsj
  committed
  8dab154

Commits

Commits on May 25, 2026