Issues

• stalling at candidate selection (+ incorrect time stamps)

  MannLabs/alphadia#847 · Filter by author Arthfael opened on Sep 9, 2026
  2

• Quant accuracy drops substantially after MBR for low-abundant precursors

  MannLabs/alphadia#827 · Filter by author rodvrees opened on Jul 9, 2026
  1

• Transfer Learning over fitting for alternative proteases

  MannLabs/alphadia#818 · Filter by author snsipe opened on Jun 10, 2026
  2

• mzML input files missing in GUI? v 2.1.1. DEB

  MannLabs/alphadia#813 · Filter by author CINVESTAV-LABI opened on May 21, 2026
  1

• Synchro-PASEF configuration file

  MannLabs/alphadia#806 · Filter by author patrick-willems opened on Mar 10, 2026
  3

• precursor.mz.calibrated not reported

  MannLabs/alphadia#796 · Filter by author msproteomics opened on Feb 5, 2026
  6

• AlphaDIA for metaproteomics

  MannLabs/alphadia#794 · Filter by author smilanna opened on Jan 29, 2026

• Unable to synchronously open file on hdf library from test data.

  MannLabs/alphadia#766 · Filter by author MiguelCos opened on Dec 9, 2025
  3

• ERROR: Can only use .str accessor with string values!

  bug
  MannLabs/alphadia#755 · Filter by author animesh opened on Nov 17, 2025
  7

• Regarding issues with out of memory

  question
  MannLabs/alphadia#711 · Filter by author sdeva27468 opened on Oct 27, 2025
  7

• AlphaDIA sometimes returns empty pg.matrix.tsv when searching with very small libraries

  MannLabs/alphadia#432 · Filter by author vbrennsteiner opened on Jan 16, 2025

• Multiplexing not working with library prediction

  bug
  MannLabs/alphadia#395 · Filter by author timheymann opened on Dec 9, 2024

• multiplexDIA

  enhancement
  MannLabs/alphadia#385 · Filter by author Kokoushin opened on Nov 26, 2024
  1

• diaPasef: No objects to concatenate

  bug
  MannLabs/alphadia#383 · Filter by author rednaSander opened on Nov 25, 2024
  2

• spectral library formats

  question
  MannLabs/alphadia#376 · Filter by author GeorgWa opened on Nov 16, 2024
  5

• GPU is not used for transfer learning although use_gpu: true

  bug
  MannLabs/alphadia#286 · Filter by author machth opened on Jul 25, 2024
  

• BUG: pg output table contains too few entries

  bug
  MannLabs/alphadia#284 · Filter by author JuliaS92 opened on Jul 25, 2024
  3

  

• ERROR: Unexpected cycle shape. Will only retain first frame group

  bugenhancement
  MannLabs/alphadia#225 · Filter by author ht-lau opened on Jun 11, 2024
  6

• Inconsistency between stat table and reported PG counts

  bug
  MannLabs/alphadia#202 · Filter by author PsuperGirl opened on May 31, 2024