MagnetDB · Trophime · May 5, 2026 · May 6, 2026 · May 6, 2026 · May 6, 2026
diff --git a/.devcontainer/docker-compose-dev-traefik-ssl.yml b/.devcontainer/docker-compose-dev-traefik-ssl.yml
@@ -221,7 +221,7 @@ services:
     container_name: magnetdb-pgadmin
     image: dpage/pgadmin4:8
     environment:
-      PGADMIN_DEFAULT_EMAIL: christophe.trophime@lncmi.cnrs.fr
+      PGADMIN_DEFAULT_EMAIL: pgadmin@magnetdb-dev.local
       PGADMIN_DEFAULT_PASSWORD: admin
       # PGADMIN_CONFIG_SERVER_MODE: 'False'
       # Environment variables for server auto-configuration

diff --git a/.gitignore b/.gitignore
@@ -96,3 +96,12 @@ tmp/*
 *.tar.gz
 backups/
 
+# duckdb
+*.duckdb
+
+*.old
+*log
+
+# direnv
+.envrc*
+*.my
diff --git a/Dockerfile b/Dockerfile
@@ -1,4 +1,4 @@
-FROM trophime/magnettools:bookworm-poetry-2.2.1
+FROM trophime/magnettools:trixie-poetry-2.4.0
 
 ARG USERNAME=feelpp
 ARG USER_UID=1000
@@ -35,6 +35,6 @@ RUN echo "create local user $USERNAME (uid=${USER_UID}, gid=${USER_GID})" \
     && ssh-keyscan github.com >> /home/${USERNAME}/.ssh/known_hosts \
     && chown -R $USER_GID:$USER_UID /home/${USERNAME}/.ssh
 
-ENV LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu/MagnetTools/:$LD_LIBRARY_PATH"
+ENV LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu/MagnetTools/:${LD_LIBRARY_PATH:-}"
 USER $USERNAME
 
diff --git a/Dockerfile-dev b/Dockerfile-dev
@@ -1,4 +1,4 @@
-FROM trophime/magnettools:bookworm-poetry-2.2.1
+FROM trophime/magnettools:trixie-poetry-2.4.0
 
 ARG USERNAME=feelpp
 ARG USER_UID=1000
@@ -35,6 +35,6 @@ RUN echo "create local user $USERNAME (uid=${USER_UID}, gid=${USER_GID})" \
     && ssh-keyscan github.com >> /home/${USERNAME}/.ssh/known_hosts \
     && chown -R $USER_GID:$USER_UID /home/${USERNAME}/.ssh
 
-ENV LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu/MagnetTools/:$LD_LIBRARY_PATH"
+ENV LD_LIBRARY_PATH="/usr/lib/x86_64-linux-gnu/MagnetTools/:${LD_LIBRARY_PATH:-}"
 USER $USERNAME
 
diff --git a/docker-compose-dev-traefik-ssl.yml b/docker-compose-dev-traefik-ssl.yml
@@ -132,7 +132,7 @@ services:
       - /bin/bash
       - -c
       - |
-        npm install --legacy-peer-deps
+        npm install
         npm run serve
     working_dir: /app
     labels:

diff --git a/docker-compose-traefik-ssl.yml b/docker-compose-traefik-ssl.yml
@@ -1,7 +1,7 @@
 version: '3'
 services:
   proxy:
-    image: traefik:3.3
+    image: traefik:v3.6.7
     container_name: magnetdb-traefik
     ports:
       - "80:80"

diff --git a/network_internal.conf b/network_internal.conf
diff --git a/poetry.lock b/poetry.lock
diff --git a/prompts/JNL-G_DMP_full_Opidor.md b/prompts/JNL-G_DMP_full_Opidor.md
diff --git a/prompts/MagnetDB_profile_README.md b/prompts/MagnetDB_profile_README.md
@@ -0,0 +1,169 @@
+<!--
+This file is intended to live at  github.com/<MagnetDB-org>/.github  →  profile/README.md
+It renders as the organization landing page.
+-->
+
+<!-- Optional: add a logo here -->
+<!-- <p align="center"><img src="path/to/logo.svg" width="180" alt="MagnetDB logo"></p> -->
+
+<p align="center">
+  <a href="https://anr.fr"><img src="https://anr.fr/typo3conf/ext/anr_skin/Resources/Public/assets/img/anr-logo-2021-complet.png" width="220" alt="ANR – Agence nationale de la recherche"></a>
+  &nbsp;&nbsp;
+  <img src="assets/jnlg-logo-1.png" width="80" alt="JNL-G project logo">
+</p>
+
+# MagnetDB
+
+**A scientific data management and simulation platform for high-field magnet research.**
+
+MagnetDB centralizes the configurations, operational data, simulation workflows and analytics of the high-field magnets operated at the [Laboratoire National des Champs Magnétiques Intenses](https://lncmi.cnrs.fr) (LNCMI), CNRS. LNCMI is the french magnet user facility located on 2 sites -- Grenoble (LNCMI-G) and Toulouse (LNCMI-T).
+
+It is the foundation for the digital-twin work being carried out under the ANR JNL-G project (2026–2030) and integrates with the Feel++ scientific computing framework developed at [CEMOSIS](https://cemosis.fr).
+
+The platform serves researchers, magnet designers, operators and lab directors with a single view of magnet configurations, real-time and historical operational data, simulation results, and predictive-maintenance signals.
+
+---
+
+## What's in this organization
+
+The MagnetDB organization hosts the open-source components of the platform. Restricted components (in particular parts of MagnetTools) are kept in private repositories; built artifacts for those are distributed via the LNCMI internal apt depot and the `feelpp/magnettools` DockerHub image.
+
+### Core platform
+
+| Repository | Purpose |
+|---|---|
+| **`python_magnetdb`** | Django + FastAPI backend, PostgreSQL schema, REST API, background workers, S3/MinIO integration |
+| **`magnetdb-frontend`** | Web frontend — currently migrating from Vue 2 to React 18 + TypeScript + Vite |
+| **`python_magnetapi`** | Lightweight client library for the MagnetDB API |
+
+### Geometry, mesh and CAD
+
+| Repository | Purpose |
+|---|---|
+| **`python_magnetgeo`** | Polymorphic geometry definitions for LNCMI-G resistive and superconductor magnets |
+| **`python_magnetgmsh`** | Mesh generation from `python_magnetgeo` definitions via Gmsh |
+| **`hifimagnet-salome`** | CAD and Mesh Generation with [SALOME](https://www.salome-platform.org) tools (requires a valid **MeshGems** license) |
+
+### Simulation setup and execution
+
+| Repository | Purpose |
+|---|---|
+| **`python_magnetsetup`** | Templating engine that turns a MagnetDB configuration into a Feel++ / HiFiMagnet simulation case |
+| **`python_magnetworkflow`** | Orchestrated workflow: setup → CAD → mesh → run → archive |
+| **`hifimagnet-paraview`** | ParaView plugins and post-processing scripts |
+
+### Operational data and analysis
+
+| Repository | Purpose |
+|---|---|
+| **`python_magnetrun`** | Parsing, curation and analysis of magnets operational data from the different control and monitoring systems -- namely Pupitre, PigBrother and Hybrid MCS recordings following internal LNCMI nomenclature |
+| **`magnet-scipy`** | SciPy-based analytics for magnet operational data |
+| **`python_magnetcooling`** | Cooling-loop and thermal-hydraulic modelling helpers |
+
+### C++ tools (with Python bindings)
+
+| Repository | Purpose |
+|---|---|
+| **`python_magnettools`** | Python bindings to the C++ MagnetTools library (analytical magnet calculations) |
+
+---
+
+## How the pieces fit together
+
+```
+                ┌───────────────────────────────────────────────────┐
+                │              MagnetDB (Django + FastAPI)          │
+                │  PostgreSQL · MinIO (S3) · Celery · LemonLDAP SSO │
+                └───────────────────────────────────────────────────┘
+                           ▲                          ▲
+        ┌──────────────────┘                          └──────────────────┐
+        │                                                                │
+operational data                                              simulation pipeline
+        │                                                                │
+python_magnetrun                                              python_magnetsetup
+        │                                                              │ │
+   curation                                                      Feel++ │ HiFiMagnet
+   ETL                                                                  │ │
+   stats                                                        Orchestrated workflows
+   anomaly                                                              │ │
+   detection                                                            │ python_magnetgmsh
+        │                                                               │ │
+        ▼                                                               ▼ ▼
+Pupitre · PigBrother · Hybrid                              CAD · mesh · results · provenance
+(MCS recordings, sshfs)                                    (attachments in MinIO)
+```
+
+The platform follows a three-layer operational data architecture: 
+
+- **Raw** (sshfs, LNCMI-internal) → **Curated Parquet on S3** (canonical interchange layer) → **Derived statistics in PostgreSQL + S3**.
+
+---
+
+## Getting started
+
+- **Documentation**: see the docs site of the relevant repository (each component ships its own Sphinx / Antora site)
+- **Demo stack**: a minimal Docker Compose setup (postgres + redis + minio + api + jupyter) is available in `python_magnetdb` for students and external evaluators
+- **Container images**: published to GitHub Container Registry (`ghcr.io/<org>/...`)
+- **HPC**: Apptainer / Singularity images are available for SLURM / PBS / SGE clusters
+
+If you are joining the project as a student or contributor, start with `python_magnetdb` and the demo Docker Compose stack — it gives you a working MagnetDB instance with a curated seed dataset in under five minutes.
+
+> [!NOTE] The demo stack is intended for evaluation and development purposes. It is not production-ready and should not be used to deploy a real MagnetDB instance.
+
+> [!NOTE] Container images may not be actually published to GHCR until the first stable release (v1.0.0) is tagged.
+
+---
+
+## Related projects
+
+- **[Feel++](https://github.com/feelpp/feelpp)** — finite-element framework used by HiFiMagnet for non-linear multiphysics magnet simulation
+- **Scimba** — scientific machine-learning framework used in the JNL-G project for ROM and Neural Galerkin methods
+- **JNL-G (ANR AAPG2025)** — Digital twin of the LNCMI-G installation; the project under which MagnetDB is being extended into a full digital-twin platform
+- **FASUM (ANR Equipex+)** — 40 T all-superconducting user magnet at LNCMI-G; MagnetDB ingests its operational data
+- **EMFL** — European Magnetic Field Laboratory; LNCMI-G is one of three EMFL member facilities
+
+---
+
+## Contributing
+
+Contributions are welcome. Each repository has its own `CONTRIBUTING.md` describing coding standards, testing, and the pull-request workflow.
+
+- Issues and pull requests are tracked per repository
+- Larger architectural discussions happen in `python_magnetdb` Discussions
+- Releases follow [semantic versioning](https://semver.org/)
+- Tagged releases are archived on [Software Heritage](https://www.softwareheritage.org/) and [Zenodo](https://zenodo.org/) with a DOI
+
+---
+
+## Data management
+
+The data managed by MagnetDB in the context of the JNL-G project is described in the project's Data Management Plan. **JNL-G's data are operational data of the LNCMI-G installation — recordings produced by the magnet, power and cooling control systems** while a magnet is energized. User experimental data (measurements performed by external user teams on their own samples) are out of scope and are governed by the [EMFL DMP](https://emfl.eu/).
+
+---
+
+## Funding and acknowledgments
+
+MagnetDB is developed at LNCMI (CNRS UPR 3228) in collaboration with CEMOSIS (Université de Strasbourg). Its development has received support from:
+
+- **ANR AAPG2025 JNL-G** — *Digital twin of the LNCMI-G*
+- **H2020 ISABEL** (Grant Agreement No 871106) — *Improving the sustainability of the European Magnetic Field Laboratory*
+- **ANR Equipex+ FASUM** (ANR-21-ESRE-0027) — *Forty Tesla Superconducting User Magnet*
+- **CNRS** institutional support to LNCMI as a national research infrastructure
+
+<p>
+  <a href="https://anr.fr"><img src="https://anr.fr/typo3conf/ext/anr_skin/Resources/Public/assets/img/anr-logo-2021-complet.png" height="50" alt="ANR – Agence nationale de la recherche"></a>
+  &nbsp;&nbsp;
+  <img src="assets/jnlg-logo-1.png" height="50" alt="JNL-G project logo">
+</p>
+
+---
+
+## Contact
+
+- **Lead developer**: Christophe Trophime — *christophe.trophime@lncmi.cnrs.fr*
+- **LNCMI Grenoble**: 25 avenue des Martyrs, 38000 Grenoble, France — [lncmi.cnrs.fr](https://lncmi.cnrs.fr)
+- **Issues**: please open them in the relevant repository of this organization
+
+---
+
+<sub>MagnetDB is open-source software. Public components are released under the Apache-2.0 or LGPL-3.0 license (see each repository for its exact terms). Documentation and demonstration datasets are released under CC0 or CC-BY-4.0.</sub>