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Allow user to define UMI, forward and reverse read extension in the metadata file

Status: Open.

#41 In HiDiHlabs/umi_alignment;

· shashwatsahay opened on Aug 14, 2025

Adapter trimming before umi extraction

Status: Open.

#40 In HiDiHlabs/umi_alignment;

· shashwatsahay opened on Aug 14, 2025

Make all outputs into cram instead of bam

Status: Open.

#39 In HiDiHlabs/umi_alignment;

· shashwatsahay opened on Aug 14, 2025

Adapter_R1 and Adapter_R3 is too specific in the config file

Status: Open.

#38 In HiDiHlabs/umi_alignment;

· shashwatsahay opened on Jul 28, 2025

Left Align Indels

Status: Open.

#32 In HiDiHlabs/umi_alignment;

· dansteiert opened on Sep 10, 2024

Add Metric Outputs

Status: Open.

#31 In HiDiHlabs/umi_alignment;

· dansteiert opened on Jul 31, 2024

All for job grouping

enhancementNew feature or requestNew feature or request

Status: Open.

#27 In HiDiHlabs/umi_alignment;

· shashwatsahay opened on May 6, 2024

Make Branch for multi-sample running

enhancementNew feature or requestNew feature or request

Status: Open.

#26 In HiDiHlabs/umi_alignment;

· dansteiert opened on Apr 5, 2024

Output Documentation

Status: Open.

#17 In HiDiHlabs/umi_alignment;

· shashwatsahay opened on Mar 4, 2024

Add tmp_dir for all tmporary files

enhancementNew feature or requestNew feature or request

Status: Open.

#4 In HiDiHlabs/umi_alignment;

· dansteiert opened on Mar 1, 2024