Commit 485d1ef
Submodule seqan updated 61 files
- CHANGELOG.rst+16
- README.rst+2-2
- apps/alf/CMakeLists.txt+1-1
- apps/bs_tools/CMakeLists.txt+6-1
- apps/dfi/CMakeLists.txt+1-1
- apps/fiona/CMakeLists.txt+1-1
- apps/fiona/fiona.cpp+11-19
- apps/fx_tools/CMakeLists.txt+1-1
- apps/gustaf/CMakeLists.txt+1-1
- apps/insegt/CMakeLists.txt+1-1
- apps/mason2/CMakeLists.txt+1-1
- apps/micro_razers/CMakeLists.txt+1-1
- apps/ngs_roi/CMakeLists.txt+1-1
- apps/pair_align/CMakeLists.txt+1-1
- apps/param_chooser/CMakeLists.txt+1-1
- apps/rabema/CMakeLists.txt+1-1
- apps/razers/CMakeLists.txt+1-1
- apps/razers3/CMakeLists.txt+1-1
- apps/rep_sep/CMakeLists.txt+1-1
- apps/sak/CMakeLists.txt+1-1
- apps/sam2matrix/CMakeLists.txt+1-1
- apps/samcat/CMakeLists.txt+1-1
- apps/searchjoin/CMakeLists.txt+1-1
- apps/searchjoin/db.h+9-7
- apps/searchjoin/join.cpp+7-10
- apps/searchjoin/search.cpp+7-9
- apps/seqan_tcoffee/CMakeLists.txt+1-1
- apps/seqcons2/CMakeLists.txt+1-1
- apps/sgip/CMakeLists.txt+1-1
- apps/snp_store/CMakeLists.txt+1-1
- apps/splazers/CMakeLists.txt+1-1
- apps/stellar/CMakeLists.txt+1-1
- apps/tree_recon/CMakeLists.txt+1-1
- apps/yara/CMakeLists.txt+1-1
- demos/tutorial/parsing_command_line_arguments/base.cpp+97
- demos/tutorial/parsing_command_line_arguments/base.cpp.stdout
- dox/CMakeLists.txt+2-2
- dox/dox_only.sh.in
- dox/run.sh.in
- include/seqan/align/dp_scout_simd.h+2-2
- include/seqan/arg_parse/arg_parse_argument.h+24-40
- include/seqan/arg_parse/arg_parse_ctd_support.h+53-3
- include/seqan/arg_parse/arg_parse_version_check.h+15-9
- include/seqan/index/index_bidirectional_stree.h+4-4
- include/seqan/index/index_bifm_stree.h+17-11
- include/seqan/journaled_string_tree/journaled_string_tree_impl.h+1
- include/seqan/seq_io/sequence_file.h+8-4
- include/seqan/version.h+1-1
- manual/source/Infrastructure/Use/CustomBuildSystem.rst+2-2
- manual/source/Infrastructure/Use/FindSeqAnCMake.rst+34-10
- manual/source/Tutorial/GettingStarted/ParsingCommandLineArguments.rst+121-94
- tests/arg_parse/test_app.ctd+11-7
- tests/arg_parse/test_arg_parse_ctd_support.h+1
- tests/arg_parse/test_arg_parse_version_check.h+1-1
- tests/index/test_index_bifm.cpp+5-9
- tests/platform/test_platform_range_based_for_loops.h-2
- tests/seq_io/test_tag_select_intersect.h+12-9
- util/cmake/FindSeqAn.cmake+1
- util/cmake/SeqAnConsistentFPFlags.cmake+59
- util/pkgconfig/seqan.pc.in+1-1
- util/travis/linux-cibuild.sh+3
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