Repositories list

• AugLab

  Public
  This repository investigates the influence of different data augmentation strategies on MRI training performance.

  Python

  •

  GNU General Public License v3.0

  •00 forks•55 stars•99 issues•00 pull requests•Updated Apr 27, 2026Apr 27, 2026

• neuropoly-db

  Public
  Python

  •11 fork•00 stars•33 issues•00 pull requests•Updated Apr 27, 2026Apr 27, 2026

• neuro.polymtl.ca

  Public
  NeuroPoly's Website

  websitedocumentationsphinx+ 1

  websitedocumentationsphinxneuroscience

  Python

  •1010 forks•44 stars•2626 issues•33 pull requests•Updated Apr 25, 2026Apr 25, 2026

• Susceptibility-Separation-Phantom

  Public
  This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

  MATLAB

  •

  MIT License

  •11 fork•99 stars•22 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• totalspineseg

  Public
  Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

  mrisegmentationspine+ 8

  mrisegmentationspinespinal-cordsegmentation-modelsnnu-net3d-medical-imagesvertebraevertebrae-segmentationvertebrae-identification+ 1

  Python

  •

  GNU Lesser General Public License v3.0

  •88 forks•9595 stars•1717 issues•11 pull request•Updated Apr 14, 2026Apr 14, 2026

• BrainGrowthPrediction

  Public
  Pipeline to predict pediatric 3D MRI scans in a longitudinal fashion

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• intranet.neuro.polymtl.ca

  Public
  NeuroPoly's lab manual

  websitedocumentationdeep-learning+ 5

  websitedocumentationdeep-learningwikihardwareneuroscienceaccountssphinx-doc

  HTML

  •88 forks•77 stars•4646 issues•22 pull requests•Updated Apr 9, 2026Apr 9, 2026

• pediatric-mtbi-clustering

  Public
  Latent-space analysis of pediatric brain MRI for mTBI detection using autoencoder-based representations

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• awesome-spine-mri

  Public
  Awesome list about open-source spine MRI dataset.

  Creative Commons Zero v1.0 Universal

  •00 forks•22 stars•22 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• modular_optuna_ml

  Public
  Modular framework for automating large-scale permutations of Optuna ML studies

  Python

  •00 forks•33 stars•1717 issues•44 pull requests•Updated Mar 8, 2026Mar 8, 2026

• axonpacking

  Public
  MATLAB

  •

  MIT License

  •55 forks•88 stars•11 issue•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• data-management

  Public
  Repo that deals with datalad aspects for internal use

  Python

  •00 forks•44 stars•143143 issues•22 pull requests•Updated Jan 14, 2026Jan 14, 2026

• bibeasy

  Public
  Set of tools to manage academic bibliography

  Python

  •

  Apache License 2.0

  •00 forks•22 stars•1717 issues•11 pull request•Updated Dec 18, 2025Dec 18, 2025

• synthetic-pediatric

  Public
  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2025Sep 30, 2025

• Flux-SynthSeg-Evaluation

  Public
  Host for interactive figures of a poster presented at the 2025 Flux Conference

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 6, 2025Sep 6, 2025

• slicercart

  Public
  Python

  •

  MIT License

  •22 forks•66 stars•8989 issues•33 pull requests•Updated Aug 8, 2025Aug 8, 2025

• BMPD

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2025Jul 22, 2025

• ansible-lint

  Public
  ansible-lint checks playbooks for practices and behavior that could potentially be improved and can fix some of the most common ones for you

  Python

  •

  GNU General Public License v3.0

  •732732 forks•00 stars•00 issues•00 pull requests•Updated Jun 12, 2025Jun 12, 2025

• gitea

  Public
  https://gitea.io fork with https://git-annex.branchable.com support

  Go

  •

  MIT License

  •6.6k6.6k forks•44 stars•2222 issues•88 pull requests•Updated Jun 2, 2025Jun 2, 2025

• sct_timings

  Public
  Repository for automated, standardized time measurements of SCT scripts.

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 22, 2025May 22, 2025

• infant-longitudinal-registration

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2025Apr 30, 2025

• distriploy

  Public
  Release & deployment helper

  Python

  •

  MIT License

  •00 forks•22 stars•55 issues•11 pull request•Updated Jan 9, 2025Jan 9, 2025

• coil-qa

  Public
  Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.

  Python

  •

  MIT License

  •00 forks•11 star•44 issues•00 pull requests•Updated Nov 28, 2024Nov 28, 2024

• cortical-surface64mT

  Public
  Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

  Shell

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 20, 2024Nov 20, 2024

• segmentation-tools-awesome-list

  Public
  This awesome list refers to different 3D Slicer modules and other open source platforms/softwares/solutions availables for manual segmentation and classificatio…

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 15, 2024Nov 15, 2024

• template

  Public
  A framework for creating unbiased MRI templates of the spinal cord

  Python

  •

  MIT License

  •44 forks•55 stars•1717 issues•00 pull requests•Updated Oct 22, 2024Oct 22, 2024

• phantom-spinoza

  Public
  CAD model and recipe for MRI head-torso phantom fabrication

  MIT License

  •22 forks•22 stars•44 issues•00 pull requests•Updated Sep 23, 2024Sep 23, 2024

• changelog

  Public
  Create a changelog file from all the merged pull requests

  Python

  •

  MIT License

  •22 forks•11 star•55 issues•33 pull requests•Updated Aug 22, 2024Aug 22, 2024

• single_voxel_mrs_b0_shimming

  Public
  This repo includes a jupyter notebook to analyze and compare MRS spectra acquired using different B0 shim optimization approaches

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 24, 2024Jul 24, 2024

• pediatric-DL-registration

  Public
  HTML

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 1, 2024Jul 1, 2024