Repositories list

• scfm

  Public
  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 27, 2026Apr 27, 2026

• sushie

  Public
  Software to perform multi-ancestry SNP fine-mapping on molecular data

  pythongwasgenetics+ 7

  pythongwasgeneticsbayesian-inferencevariational-inferenceeqtlsusiejaxfine-mappingpqtl

  Linker Script

  •

  MIT License

  •77 forks•3030 stars•11 issue•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• glmax

  Public
  Fast and flexible implementation of generalized linear model in JAX

  statisticsglmjax

  statisticsglmjax

  Python

  •

  MIT License

  •00 forks•1111 stars•33 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• scientific-software-playbook

  Public
  Shell

  •

  Other

  •11 fork•88 stars•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• jaxqtl

  Public
  Flexible, scalable, QTL analyses using generalized linear models implemented in JAX

  glmqtl-mappingjax+ 1

  glmqtl-mappingjaxmolqtl

  Python

  •

  MIT License

  •33 forks•1717 stars•1313 issues•11 pull request•Updated Mar 12, 2026Mar 12, 2026

• jax_ldsc

  Public
  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• perturbvi

  Public
  Python

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• hg-meta-analysis

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 29, 2025Oct 29, 2025

• traceax

  Public
  Stochastic trace estimation using JAX

  statisticspython3machine-learn+ 2

  statisticspython3machine-learnjaxtrace-est

  Python

  •

  Apache License 2.0

  •33 forks•1717 stars•22 issues•11 pull request•Updated Aug 20, 2025Aug 20, 2025

• traceax_analysis

  Public
  analysis scripts for traceax

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 20, 2025Aug 20, 2025

• sushie-project-codes

  Public
  The analysis codes for sushie project

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated May 31, 2025May 31, 2025

• jaxqtl_analysis

  Public
  Analysis code for jaxqtl paper

  R

  •

  MIT License

  •11 fork•33 stars•00 issues•00 pull requests•Updated May 7, 2025May 7, 2025

• perturbvi_analysis

  Public
  Analysis code for perturbvi

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 28, 2025Mar 28, 2025

• FactorGo

  Public
  Software to infer latent pleiotropic components from GWAS summary data

  gwasvariational-inferencejax+ 1

  gwasvariational-inferencejaxgwas-summary-statistics

  Python

  •

  MIT License

  •00 forks•1616 stars•00 issues•00 pull requests•Updated Jan 30, 2025Jan 30, 2025

• ma-focus

  Public
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets

  Python

  •

  GNU General Public License v3.0

  •88 forks•3939 stars•77 issues•00 pull requests•Updated Apr 26, 2024Apr 26, 2024

• geneax

  Public
  Python

  •

  Apache License 2.0

  •00 forks•00 stars•33 issues•00 pull requests•Updated Feb 21, 2024Feb 21, 2024

• susiepca

  Public
  Scalable Ultra-Sparse Bayesian PCA

  pythonmachine-learningpca+ 4

  pythonmachine-learningpcabayesian-inferencefactor-analysisvariational-inferencejax

  Python

  •

  MIT License

  •77 forks•3333 stars•44 issues•00 pull requests•Updated Feb 13, 2024Feb 13, 2024

• gdf15_analyses

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 14, 2023Sep 14, 2023

• twas_sim

  Public
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex tr…

  pythongwassimulation+ 2

  pythongwassimulationeqtltwas

  Shell

  •55 forks•3030 stars•11 issue•00 pull requests•Updated Jun 18, 2023Jun 18, 2023

• FactorGo_analysis

  Public
  Analysis code for FactorGo project

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 24, 2023Mar 24, 2023

• stroke_twas

  Public
  00 forks•11 star•00 issues•00 pull requests•Updated Dec 8, 2022Dec 8, 2022

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Nov 2, 2022Nov 2, 2022

• twas_sim_paper

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 14, 2022Sep 14, 2022

• MA-FOCUS-data-code

  Public
  Data and code Availability for MA-FOCUS Project

  R

  •11 fork•11 star•00 issues•00 pull requests•Updated Jun 21, 2022Jun 21, 2022