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    15 repositories

    • happler

      Public
      A haplotype-based fine-mapping method
      fine-mapping
      fine-mapping
      Python
      •
      MIT License
      •0•3•5•1•Updated Apr 28, 2026Apr 28, 2026

    • TRTools

      Public
      Toolkit for genome-wide analysis of tandem repeats
      Python
      •
      MIT License
      •23•62•29•6•Updated Apr 27, 2026Apr 27, 2026

    • HipSTR2

      Public
      Speedify HipSTR
      C
      •
      GNU General Public License v2.0
      •0•0•0•1•Updated Mar 23, 2026Mar 23, 2026

    • DeeperNull

      Public
      Nonlinear modeling of spatiotemporal covariates for genetics tasks
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 17, 2026Mar 17, 2026

    • gymreklab.github.io

      Public
      Lab website and internal lab wiki
      HTML
      •24•0•1•2•Updated Mar 15, 2026Mar 15, 2026

    • personal-genomics-textbook

      Public
      Textbook for CSE284: Personal Genomics
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Jan 6, 2026Jan 6, 2026

    • webstr

      Public
      WebSTR database and web application code
      JavaScript
      •
      MIT License
      •4•8•11•2•Updated Nov 14, 2025Nov 14, 2025

    • LongTR

      Public
      Tandem repeat genotyping with long reads
      C++
      •
      GNU General Public License v2.0
      •5•36•6•1•Updated Sep 23, 2025Sep 23, 2025

    • EnsembleTR

      Public
      Tools for merging Tandem Repeat VCF files
      Python
      •5•37•3•0•Updated Apr 30, 2025Apr 30, 2025

    • CITRUS

      Public
      Phenotype simulation tool with flexibility to model complex interactions.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 29, 2024Dec 29, 2024

    • webSTR-API

      Public
      WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
      Python
      •
      MIT License
      •4•0•0•1•Updated Oct 23, 2024Oct 23, 2024

    • core

      Public
      The Gymrek Lab's core python library
      Python
      •
      MIT License
      •0•1•1•1•Updated Sep 7, 2024Sep 7, 2024

    • HipSTR

      Public
      This is a Gymrek lab version HipSTR.
      C
      •
      GNU General Public License v2.0
      •1•2•3•0•Updated Jun 4, 2024Jun 4, 2024

    • CAHMML

      Public
      Custom Lambda HMM Library
      Python
      •
      MIT License
      •0•5•0•0•Updated May 4, 2023May 4, 2023

    • .github

      Public
      MIT License
      •0•1•0•0•Updated Mar 16, 2022Mar 16, 2022
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