Skip to content

@birneylab birneylab

Change the repository type filter

All

    Repositories list

    17 repositories

    • varexplore

      Public
      Explore genetic variants linked around a variant of interest for low-coverage sequencing data
      Nextflow
      •
      MIT License
      •0•3•0•0•Updated Nov 14, 2025Nov 14, 2025

    • heart_rate_tmp_gxe

      Public
      Nextflow
      •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • heart_rate_tmp_pairwise_gxg

      Public
      Nextflow
      •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • heart_rate_tmp_simulation_gxg

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • flexlmm

      Public
      Flexible linear mixed model framework for Genome Wide Association Studies
      Nextflow
      •
      MIT License
      •0•18•2•0•Updated Nov 6, 2025Nov 6, 2025

    • Delphi

      Public
      Modelling human health trajectories using generative transformers
      Jupyter Notebook
      •
      MIT License
      •112•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • medaka_behaviour_pilot

      Public
      Repository describing the analysis of bold-shy behaviours in different medaka fish strains.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 29, 2025Mar 29, 2025

    • ukb_smoke_copd_lung_cancer_gxe

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • FEHAT

      Public
      Software to detect heart rate from medaka embryos
      Python
      •
      GNU General Public License v3.0
      •2•7•0•0•Updated Sep 19, 2024Sep 19, 2024

    • stitchimpute

      Public
      Pipeline that uses STITCH for imputing genotypes from low-coverage NGS data in a population.
      Jupyter Notebook
      •
      MIT License
      •0•6•1•0•Updated Aug 22, 2024Aug 22, 2024

    • CNest

      Public
      Copy Number Methods for Detection and Genome Wide Association Tests
      C++
      •5•0•0•0•Updated Nov 3, 2023Nov 3, 2023

    • somites

      Public
      HTML
      •1•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • MIKK_genome_main_paper

      Public
      Code for the paper describing the MIKK panel and its genome
      HTML
      •
      MIT License
      •3•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • MIKK_genome_companion_paper

      Public
      Repository containing the code used for the MIKK panel genome analysis
      R
      •
      MIT License
      •0•1•0•0•Updated Dec 14, 2021Dec 14, 2021

    • MIKK_GeneNetwork

      Public
      Python
      •0•0•0•0•Updated Sep 20, 2021Sep 20, 2021

    • Birney-pacman

      Public
      Python
      •0•0•0•0•Updated Sep 2, 2021Sep 2, 2021

    • foveafit

      Public
      R package for OCT analysis
      R
      •0•0•0•0•Updated Jul 12, 2021Jul 12, 2021
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.