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    42 repositories

    • metpo

      Public
      Microbial ecophysiological trait and phenotype ontology
      Python
      •0•1•102•3•Updated Apr 21, 2026Apr 21, 2026

    • bioportal_web_ui

      Public
      A Rails application for biological ontologies
      JavaScript
      •
      Other
      •42•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • bbop-skills

      Public
      Best practices for BBOP group repos, intended for coding agents and humans
      monarchinitiativeai4curation
      monarchinitiativeai4curation
      Just
      •
      Other
      •2•11•0•1•Updated Apr 8, 2026Apr 8, 2026

    • berkeleybop.github.io

      Public
      Homepages for the Berkeley BOP.
      CSS
      •
      GNU General Public License v2.0
      •10•4•6•0•Updated Apr 1, 2026Apr 1, 2026

    • minerva-requests

      Public
      JavaScript library for generating request information for interactions with a Minerva server.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•1•Updated Mar 3, 2026Mar 3, 2026

    • bbop-graph-noctua

      Public
      A subclass of bbop-graph that layers on a complete annotation and graph editing model for the Noctua set of tools.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • bbop-response-barista

      Public
      Response handler for dealing with the parsing of responses from Barista (enveloping Minerva).
      JavaScript
      •1•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • metpo-kgm-studio

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•12•1•Updated Nov 24, 2025Nov 24, 2025

    • metpo-kgm-copier

      Public
      Copier template for METPO/KG-Microbe ontology curation workflow
      Python
      •0•0•0•0•Updated Oct 2, 2025Oct 2, 2025

    • contextualizer

      Public
      Python
      •3•1•3•1•Updated May 16, 2025May 16, 2025

    • artificial-intelligence-ontology

      Public
      An ontology modeling classes and relationships describing deep learning networks, their component layers and activation functions, machine learning methods, as …
      deep-learningvocabularyontology
      deep-learningvocabularyontologyartificial-intelligence
      Jupyter Notebook
      •9•48•48•0•Updated Nov 12, 2024Nov 12, 2024

    • bbop-manager-golr

      Public
      Manager for handling communication and callbacks with GOlr instances.
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•6•1•Updated Jun 11, 2024Jun 11, 2024

    • bbop-core

      Public
      A set of useful and common JavaScript functions to supplement other more basic utility libraries.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•0•Updated Jun 11, 2024Jun 11, 2024

    • bbop-rest-manager

      Public
      The is the "new" version of the manager event model for BBOP systems.
      JavaScript
      •2•1•2•2•Updated Nov 27, 2023Nov 27, 2023

    • bero

      Public
      Biological and Environmental Research Ontology (BERO)
      Makefile
      •
      MIT License
      •0•1•1•0•Updated Mar 28, 2023Mar 28, 2023

    • lsi.sh

      Public
      MegaCLI script to configure and monitor LSI raid cards.
      megaraidlsi
      megaraidlsimegaclimegaraid
      Shell
      •
      Creative Commons Attribution Share Alike 4.0 International
      •6•14•0•0•Updated Jan 13, 2023Jan 13, 2023

    • kgviz-model

      Public
      Schema for configurations / stylesheets for visualizing ontology and KGs
      visualizationjavascriptgraphviz
      visualizationjavascriptgraphviznodeontologystylesheetkgsontology-visualizationobographslinkml
      Python
      •0•5•1•0•Updated Aug 17, 2022Aug 17, 2022

    • bbop-graph

      Public
      General purpose (mathematical) graph library in JavaScript.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•3•0•Updated Aug 10, 2022Aug 10, 2022

    • .github

      Public
      0•0•0•0•Updated May 12, 2022May 12, 2022

    • bbop-manager-minerva

      Public
      Manager for handling communication and callbacks with Minerva instances (mediated by Barista).
      JavaScript
      •1•0•1•1•Updated Jun 4, 2021Jun 4, 2021

    • berkeleybop

      Public
      Generic repo for BBOP.
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Apr 24, 2019Apr 24, 2019

    • bbop-manager-sparql

      Public
      Manager for handling communication and callbacks with a SPARQL endpoint; also allows for use of templates.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jul 3, 2018Jul 3, 2018

    • golr-schema

      Public
      Utility to generate a schema.xml from a yaml config file.
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•1•0•Updated Jan 29, 2018Jan 29, 2018

    • class-expression

      Public
      A handling library for OWL-style class expressions in JavaScript.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Oct 1, 2017Oct 1, 2017

    • galaxy-monarch-curl

      Public
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Dec 5, 2016Dec 5, 2016

    • apollo-log-scraper

      Public
      JavaScript
      •1•0•0•0•Updated Nov 23, 2016Nov 23, 2016

    • bbop-response-golr

      Public
      Response type and API for handling the returns from a GOlr instance in a standard way.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Nov 1, 2016Nov 1, 2016

    • obo-models

      Public
      Models for the "generic" Noctua.
      Perl
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 27, 2016Oct 27, 2016

    • golr-conf

      Public
      GOlr configuration file handling and API.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 21, 2016Oct 21, 2016

    • bbop-rest-response

      Public
      Generic handler for dealing with the gross parsing and handling of responses from a REST service.
      JavaScript
      •1•0•0•0•Updated Oct 21, 2016Oct 21, 2016
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