All

117 repositories

sum-buddy
Public
Generate and save checksums for all (or certain) contents of given directory.
cli metadata csv
cli metadata csv images inventory fair reproducibility checksums deduplication verifier
Python
•
MIT License
•0•3•6•1•Updated Apr 26, 2026Apr 26, 2026
saev-demo
Public
Sparse autoencoders for vision
Python
•
MIT License
•9•0•0•8•Updated Apr 26, 2026Apr 26, 2026
saev-fish-dev
Public
SAEs for dichotomous keys with fish
Python
•
MIT License
•9•0•0•10•Updated Apr 26, 2026Apr 26, 2026
Imageomics-guide
Public
Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.
git metadata documentation
git metadata documentation data code guide best-practices models projects collaboration
Python
•
Creative Commons Zero v1.0 Universal
•0•5•8•2•Updated Apr 25, 2026Apr 25, 2026
HComPNet
Public
Code repository for HComP-Net (ICLR'25)
computer-vision evolution traits
computer-vision evolution traits phylogeny explainable-ai
Python
•
MIT License
•3•2•0•0•Updated Apr 25, 2026Apr 25, 2026
tree-seedling-detection
Public
Tree seedling detection and species identification using YOLO + BioCLIP
taxonomy biology cv
taxonomy biology cv image-classification ecology clip plant-identification species-identification yolo-object-detection bioclip
Python
•
MIT License
•0•2•0•0•Updated Apr 24, 2026Apr 24, 2026
zarte-empirie
Public
Tools for attending to biological specimens and the traits that set them apart, interactively, through the lens of machine learning. A way of looking that exten…
MIT License
•0•0•0•0•Updated Apr 23, 2026Apr 23, 2026
task-referenced-iqa
Public
Task-Referenced Image Quality Assessment (TR-IQA) - K-State KDD Lab
Dockerfile
•0•0•0•1•Updated Apr 23, 2026Apr 23, 2026
kabr-tools
Public
Modular tools pipeline for annotating animal behavior. These were specifically designed during construction of the KABR dataset, and have been generalized with …
video drone annotation
video drone annotation conservation zebra giraffe cvat animal-behavior-recognition drone-videos
Python
•
MIT License
•0•7•10•2•Updated Apr 23, 2026Apr 23, 2026
repo-exporter
Public
A Python script that collects key info (Name, description, creation date, last updated date, contributors, etc.) from all repos in a GitHub organization and sav…
github inventory google-sheets
github inventory google-sheets api-integration repo-records organization-based-tools
Python
•
MIT License
•0•2•8•2•Updated Apr 23, 2026Apr 23, 2026
catalog
Public template
Catalog app for Imageomics code, data, models, and spaces hosted on GitHub and Hugging Face. Designed for improved discoverability of Imageomics products, the c…
github api open-source
github api open-source data catalog code models inventory open-science spaces
JavaScript
•
MIT License
•0•7•7•0•Updated Apr 22, 2026Apr 22, 2026
imageomics.github.io
Public
Repository to host the Imageomics Institute's website.
Creative Commons Attribution 4.0 International
•0•0•0•1•Updated Apr 22, 2026Apr 22, 2026
pybioclip
Public
Python package and CLI that simplifies using the BioCLIP family of foundation models.
taxonomy biology cv
taxonomy biology cv image-classification clip command-line-interface bioclip knowledge-guided
Python
•
MIT License
•13•60•13•3•Updated Apr 22, 2026Apr 22, 2026
KABR
Public
Centralized resource to describe and link out to all components of the KABR project (Kenyan Animal Behavior Recognition).
behavior data tools
behavior data tools code models pipelines kabr ungulates mini-scenes
HTML
•
Creative Commons Zero v1.0 Universal
•0•0•0•1•Updated Apr 22, 2026Apr 22, 2026
fair_drones
Public
The FAIR² Drones Data Standard provides a comprehensive framework for documenting drone-based wildlife datasets, ensuring they are Findable, Accessible, Interop…
uav drone robotics
uav drone robotics standards fair ecology animal-behavior metadata-standards ai-ready dataset-documentation
Creative Commons Zero v1.0 Universal
•0•1•1•0•Updated Apr 21, 2026Apr 21, 2026
Finer-CAM
Public
This is an official implementation for Finer-CAM: Spotting the Difference Reveals Finer Details for Visual Explanation. [CVPR'25] Better understand discriminati…
computer-vision visualizations class-activation-maps
computer-vision visualizations class-activation-maps fine-grained-classification explainable-ai xai saliency-maps vision-transformers
Jupyter Notebook
•
Apache License 2.0
•5•49•2•0•Updated Apr 21, 2026Apr 21, 2026
conference-tutorials-2026
Public
Tools tutorials for the first Imageomics Conference.
tutorials workshop-website
tutorials workshop-website
MIT License
•0•1•0•0•Updated Apr 20, 2026Apr 20, 2026
dna-trait-analysis
Public
Goal: to find associations between dna data and visual traits.
Jupyter Notebook
•
MIT License
•1•4•7•6•Updated Apr 14, 2026Apr 14, 2026
simple-localized-counterfactuals
Public
Source code for the CVPR HOW workshop paper
MIT License
•0•0•0•0•Updated Apr 10, 2026Apr 10, 2026
emb-explorer
Public
An interactive tool for classifying images with a pretrained model and exploring clustering results in 2D space.
clustering exploratory-data-analysis eda
clustering exploratory-data-analysis eda data-visualization dimensionality-reduction embedding exploratory-data-visualizations image-exploration
Python
•
MIT License
•0•3•5•0•Updated Apr 7, 2026Apr 7, 2026
TaxaAdapter
Public
TaxaAdapter
MIT License
•0•1•0•0•Updated Apr 6, 2026Apr 6, 2026
TraitBlender
Public
Blender addon for simulating raw datasets under known evolutionary models
images evolution phylogenetic-trees
images evolution phylogenetic-trees phylogenetics simulations raw-data blender-addon 3d-models
Python
•
MIT License
•2•4•0•0•Updated Apr 6, 2026Apr 6, 2026
SST
Public
Official repo for paper "Static Segmentation by Tracking: A Frustratingly Label-Efficient Approach to Fine-Grained Segmentation". Ideal for specimen image trait…
computer-vision biology trait-segmentation
computer-vision biology trait-segmentation specimen-images
Jupyter Notebook
•
MIT License
•4•10•1•5•Updated Apr 6, 2026Apr 6, 2026
wildwing
Public
Autonomous UAS Software for In Situ Imageomics Missions
drone animals autonomy
drone animals autonomy
HTML
•
MIT License
•1•7•11•6•Updated Apr 3, 2026Apr 3, 2026
bioclip-ecosystem
Public
Centralized resource to describe and link out to all components of the BioCLIP project (Code, Models, Datasets, Spaces).
data code reference
data code reference model benchmarks datasets project-website tree-of-life bioclip
HTML
•
MIT License
•0•1•4•0•Updated Apr 1, 2026Apr 1, 2026
hpc-inference
Public
A high-performance computing solution for efficient batch inference on large-scale image datasets.
Python
•
MIT License
•0•0•12•3•Updated Apr 1, 2026Apr 1, 2026
TaxonoPy
Public
A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier
taxonomy alignment hierarchy
taxonomy alignment hierarchy tree-of-life taxonomic-resolution
Python
•
MIT License
•0•16•11•3•Updated Mar 31, 2026Mar 31, 2026
open-set-atlas
Public
Interactive 3D visualization of open set and out-of-distribution detection methods for building intuition on the unit sphere
JavaScript
•
MIT License
•0•0•1•0•Updated Mar 30, 2026Mar 30, 2026
HDR-SMood-Challenge-sample
Public
Sample Submission Repository for the 2025 HDR Scientific Mood Challenge (Modeling out of distribution).
sample-code out-of-distribution beetles
sample-code out-of-distribution beetles ml-challenge
Jupyter Notebook
•
MIT License
•5•1•0•1•Updated Mar 27, 2026Mar 27, 2026
HDR-SMood-Challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Scientific Mood ML Challenge.
out-of-distribution beetles ml-challenge
out-of-distribution beetles ml-challenge
Python
•
MIT License
•0•5•1•0•Updated Mar 27, 2026Mar 27, 2026

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Imageomics Institute

All

All

117 repositories

sum-buddy

saev-demo

saev-fish-dev

Imageomics-guide

HComPNet

tree-seedling-detection

zarte-empirie

task-referenced-iqa

kabr-tools

repo-exporter

catalog

imageomics.github.io

pybioclip

KABR

fair_drones

Finer-CAM

conference-tutorials-2026

dna-trait-analysis

simple-localized-counterfactuals

emb-explorer

TaxaAdapter

TraitBlender

SST

wildwing

bioclip-ecosystem

hpc-inference

TaxonoPy

open-set-atlas

HDR-SMood-Challenge-sample

HDR-SMood-Challenge

All

All

Repositories list

117 repositories