error in ordering cells step

[GreyRockIQ]

Hi @kpatel427
Thanks for the code. I am running into errors in 4. ordering cells below code as it is and any other change is not solving the issue..

cds <- order_cells(cds, reduction_method = 'UMAP', root_cells = colnames(cds[,clusters(cds) == 5]))

Error in Y[, root_pr_nodes, drop = F] : subscript out of bounds

Any suggestions?

Thanks
GreyRock

[mayaziv]

hi I'm having the same problem did you solve it?