Issues

• Grouped command list (#429) and banner author line are on master but missing from a.7.x releases

  chrchang/plink-ng#578 · Filter by author BenjaminDEMAILLE opened on Oct 1, 2026
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• Proposal: keep master on the latest release and develop on a dev branch

  chrchang/plink-ng#560 · Filter by author BenjaminDEMAILLE opened on Sep 26, 2026

• Bioconda packages are stale and can't be auto-bumped (hyphenated tags)

  chrchang/plink-ng#557 · Filter by author BenjaminDEMAILLE opened on Sep 25, 2026
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• Tracking: multinomial logistic regression for categorical phenotypes in --glm

  chrchang/plink-ng#518 · Filter by author BenjaminDEMAILLE opened on Sep 22, 2026
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• Tracking: September 2026 bug sweep of 1.9 and 2.0

  chrchang/plink-ng#510 · Filter by author BenjaminDEMAILLE opened on Sep 22, 2026

• Support for reading from alternative seekable sources besides FILE* (specifically for s3 support)

  chrchang/plink-ng#486 · Filter by author jpfeuffer opened on Sep 16, 2026
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• Proposal: generate a versioned documentation site from plink2_help.cc

  chrchang/plink-ng#396 · Filter by author BenjaminDEMAILLE opened on Sep 7, 2026
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• --make-pgen reserves ~3.8x more memory than it uses on dosage data, with no speed benefit

  chrchang/plink-ng#392 · Filter by author BenjaminDEMAILLE opened on Sep 6, 2026
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• MTAG (multi-trait analysis of GWAS): where, if anywhere, it belongs

  chrchang/plink-ng#366 · Filter by author BenjaminDEMAILLE opened on Sep 2, 2026

• Feature-parity audit: 266 PLINK 1.9 flags across 18 modules have no PLINK 2.0 equivalent

  chrchang/plink-ng#344 · Filter by author BenjaminDEMAILLE opened on Aug 31, 2026
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• --freq counts emits fractional allele counts for het haploid calls, and disagrees with --geno-counts/--hardy on the same file

  chrchang/plink-ng#341 · Filter by author BenjaminDEMAILLE opened on Aug 31, 2026
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• Feature request: Option to include an AC field when converting to .bcf (or .vcf) format

  chrchang/plink-ng#326 · Filter by author kkellysci opened on Apr 23, 2026
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• Feature request: hamming distance and MDS in plink2

  chrchang/plink-ng#311 · Filter by author janxkoci opened on Oct 30, 2025
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• how to install in arm64 ? thks

  chrchang/plink-ng#253 · Filter by author zsw-test opened on Jan 15, 2024
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• pgenlibr: multi-threading?

  chrchang/plink-ng#249 · Filter by author agilly-regn opened on Oct 13, 2023
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• Possible to encode a bed file with no variants?

  chrchang/plink-ng#186 · Filter by author CreRecombinase opened on Jul 14, 2021
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• Logging bug in bmerge

  chrchang/plink-ng#140 · Filter by author andrew-slater opened on Apr 30, 2020
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• Multi-variate test in Plink

  chrchang/plink-ng#110 · Filter by author SiyangLiu opened on May 7, 2019
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• Unjustified NA output?

  chrchang/plink-ng#98 · Filter by author apoliakov opened on Jan 21, 2019
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• Common copy number polymorphism Results

  chrchang/plink-ng#64 · Filter by author Jingjiao-ma opened on Feb 9, 2018

• About CNV association

  chrchang/plink-ng#62 · Filter by author Jingjiao-ma opened on Jan 31, 2018

• What is the multiple correction method used in CNV region-based assco

  chrchang/plink-ng#61 · Filter by author ruqianl opened on Jan 29, 2018
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