Merge remote-tracking branch 'upstream/main' into pytest

Author: effigies

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ ci:
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer

.zenodo.json

@@ -0,0 +1,50 @@
+# schema: https://github.com/citation-file-format/citation-file-format/blob/main/schema-guide.md
+
+cff-version: 1.2.0
+
+title: BIDS Validator - Python
+
+license: MIT
+
+type: software
+
+repository-code: https://github.com/bids-standard/python-validator
+
+message: >
+    The bids-validator is a software tool to check neuroimaging datasets for adherence to the Brain Imaging Data Structure (BIDS) format.
+    More information about BIDS can be found at <a href=\"https://bids.neuroimaging.io\">bids.neuroimaging.io</a>.
+
+keywords:
+  - brain imaging data structure
+  - BIDS
+  - neuroscience
+  - neuroimaging
+  - neuroinformatics
+
+authors:
+  - family-names: Markiewicz
+    given-names: Christopher J.
+    orcid: https://orcid.org/0000-0002-6533-164X
+    affiliation: Stanford University
+  - family-names: Brady
+    given-names: Daniel
+    orcid: https://orcid.org/0000-0003-4671-0676
+    affiliation: University of Sheffield
+  - family-names: Blair
+    given-names: Ross
+    orcid: https://orcid.org/0000-0003-3007-1056
+    affiliation: Stanford University
+  - family-names: Appelhoff
+    given-names: Stefan
+    orcid: https://orcid.org/0000-0001-8002-0877
+  - family-names: Gau
+    given-names: Rémi
+    orcid: https://orcid.org/0000-0002-1535-9767
+  - family-names: Gunalan
+    given-names: Kabilar
+    orcid: https://orcid.org/0000-0001-6964-4865
+    affiliation: "McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA"
+  - family-names: Hobson-Lowther
+    given-names: Teal
+  - family-names: Papadopoulos Orfanos
+    given-names: Dimitri

CITATION.cff

@@ -171,6 +171,8 @@ strict = true
 exclude = [
   "^tests/data",
 ]
+warn_unreachable = true
+enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"]
 
 [[tool.mypy.overrides]]
 module = 'bids_validator._version'

pyproject.toml

@@ -26,7 +26,7 @@ class FileTree:
 
     def __attrs_post_init__(self) -> None:
         if self.is_dir is None:
-            object.__setattr__(self, 'is_dir', self.path_obj.is_dir())
+            object.__setattr__(self, 'is_dir', self.path_obj.is_dir())  # type: ignore[unreachable]
         object.__setattr__(
             self,
             'children',