PanelAgent/pyproject.toml at main · PanCodeInventory/PanelAgent · GitHub

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[build-system]
requires = ["setuptools>=77"]
build-backend = "setuptools.build_meta"

[project]
name = "panelagent"
dynamic = ["version"]
description = "SQLite-backed flow cytometry panel core: CLI (pa), MCP stdio server, and web workbench runtime"
readme = "README.md"
requires-python = ">=3.10"
license = "MIT"
license-files = ["LICENSE"]
dependencies = ["pydantic>=2"]

[project.optional-dependencies]
mcp = ["mcp>=1.29.1,<2"]
backend = [
    # Mirrors backend/requirements.txt; keep the two in sync (docs/distribution.md).
    "fastapi>=0.115.0",
    "uvicorn[standard]>=0.32.0",
    "pydantic>=2.10.0",
    "pydantic-settings>=2.6.0",
    "python-multipart>=0.0.17",
    "pandas",
    "numpy",
    "scipy",
    "openai",
    "openpyxl>=3.1.0",
    "python-dotenv",
    "itsdangerous>=2.1.0",
    "xlrd>=2.0.1",
]
dev = ["pytest>=8", "ruff>=0.6"]

[project.scripts]
pa = "panelagent.cli:main"

[tool.setuptools]
# Root-level domain modules required by the backend extra (imported lazily via
# importlib by backend.app). They ship unconditionally; only the backend extra
# pulls their third-party dependencies.
py-modules = ["data_preprocessing", "llm_api_client", "panel_generator", "spectral_viewer"]

[tool.setuptools.dynamic]
version = { attr = "panelagent.__version__" }

[tool.setuptools.packages.find]
include = ["panelagent*", "backend*"]

[tool.setuptools.package-data]
"panelagent.data.seed" = ["*.json", "README.md"]
"panelagent.data" = ["skills/**"]

[tool.pytest.ini_options]
testpaths = ["tests"]

[tool.ruff]
line-length = 120
target-version = "py310"