1.2.0 (2026-04-05)
- fix panaroo bug, added fastANI rule, harmonized multi-threading (5d6c810)
- update github CI workflows and config options (df6d610)
- adjust threads of prokka run (6f3e4c2)
- introduced general reference parameter in config file. refactored some qc rules. (328c40a)
- new snakefmt directive order (50f20da)
- reference input (7778d93)
- schema and README update (20a6fc9)
- typos (e72502d)
- update CI workflows (fdf4adc)
1.1.0 (2025-12-10)
- add prokka and bakta for annotation (807df3a)
- added bakta for annotation (4a88b34)
- added panaroo as a genome comparison tool, closes #6 (20e70b2)
- added prokka for annotation (1579c87)
- added quast, allow multiple annotation tools, allow local bakta db (7d9f6cd)
- added missing dag. (b1d0d34)
- added option to skip pangenome analysis (0e829f6)
- correct env names, use relative path for pgap fasta (938ac49)
- merge commit (d4cc6c5)
- pipe armfinder_update to log. (a85d20b)
- remove option to define output dir in config. (0454259)
- update armdfinder db when local db is used. update bakta version. (db385f0)
- update readmes (a4a147a)
- updated schema (7e9dfc0)
- use absolute input paths for pgap helpers (f4db893)
- use correct input for quast reference, closes #7 (84c07a6)
- use results as standard output dir (1b6695f)
- validate locus tag for bakta annotation; closes #8 (6048f72)