add hexbin to imports, remove viridis, add missing rlang::

Author: clabornd

DESCRIPTION

@@ -40,7 +40,8 @@ Suggests:
     testthat,
     purrr,
     viridis,
-    DT
+    DT,
+    hexbin
 Remotes:
     github::EMSL-Computing/MetaCycData
 VignetteBuilder: knitr

R/mass_error_plot.R

@@ -117,9 +117,9 @@ mass_error_plot <- function(cmsObj,
     }
 
     if (log_color_scale) {
-      p <- p + viridis::scale_fill_viridis(trans = "log")
+      p <- p + ggplot2::scale_fill_viridis_c(trans='log')
     } else {
-      p <- p + viridis::scale_fill_viridis()
+      p <- p + ggplot2::scale_fill_viridis_c()
     }
 
     plotly::ggplotly(p)

R/plot.CoreMSData.R

@@ -42,8 +42,8 @@ plot.CoreMSData <- function(x,
     dplyr::distinct(!!rlang::sym(mass_id)) %>% 
     dplyr::tally() %>% dplyr::rename(Sample = sample_id, Monoisotopic = n)
 
-  Isotopic <- x$iso_data %>% dplyr::group_by(!!sym(sample_id)) %>% 
-    dplyr::distinct(!!sym(mass_id)) %>% 
+  Isotopic <- x$iso_data %>% dplyr::group_by(!!rlang::sym(sample_id)) %>% 
+    dplyr::distinct(!!rlang::sym(mass_id)) %>% 
     dplyr::tally() %>%
     dplyr::rename(Sample = sample_id, Isotopic = n)