-
Notifications
You must be signed in to change notification settings - Fork 3
Expand file tree
/
Copy pathslurm_mpi_job
More file actions
executable file
·20 lines (16 loc) · 918 Bytes
/
slurm_mpi_job
File metadata and controls
executable file
·20 lines (16 loc) · 918 Bytes
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
#!/bin/csh
#SBATCH --account mscms # charged account
#SBATCH --time 120 # 30 minute time limit
#SBATCH --nodes 1 # 2 nodes
#SBATCH --ntasks-per-node 16 # 16 processes on each per node
#SBATCH --job-name enviroms # job name in queue (``squeue``)
#SBATCH --error enviroms-%j.err # stderr file with job_name-job_id.err
#SBATCH --output enviroms-%j.out # stdout file
#SBATCH --mail-user=corilo@pnnl.gov # email user
#SBATCH --mail-type END # when job ends
#SBATCH --reservation eber373-benchmarking
module purge
module load intel/16.1.150
module load impi/5.1.2.150
export SLURM_CPU_BIND=none
mpirun -n 48 ~/enviroms/venv/bin/enviroMS run-di-workflow -r 48 --mpi /dtemp/mscms/enviroms/data/EnviromsFile.json