Fix MassListBaseClass ignoring user-configured DataInputSetting

MassListBaseClass.__init__ used deepcopy(DataInputSetting()) which
always creates a fresh default instance, ignoring any user
customizations set on MSParameters.data_input. Changed to use
deepcopy(MSParameters.data_input) so user-configured parameters
(e.g. header_translate mappings) are respected.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

Author: robertyoung3

corems/mass_spectrum/input/baseClass.py

@@ -12,8 +12,7 @@
 from s3path import S3Path
 
 from corems.encapsulation.constant import Labels
-from corems.encapsulation.factory.parameters import default_parameters
-from corems.encapsulation.factory.processingSetting import DataInputSetting
+from corems.encapsulation.factory.parameters import MSParameters, default_parameters
 from corems.encapsulation.input.parameter_from_json import (
     load_and_set_parameters_class,
     load_and_set_parameters_ms,
@@ -112,7 +111,7 @@ def __init__(
 
         self.sample_name = sample_name
 
-        self._parameters = deepcopy(DataInputSetting())
+        self._parameters = deepcopy(MSParameters.data_input)
 
     @property
     def parameters(self):