markov-builder/pyproject.toml at master · CardiacModelling/markov-builder · GitHub

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[build-system]

requires = [
         "setuptools>=61",
         "wheel",
         "setuptools_scm[toml]>=8.0"
         ]

build-backend = "setuptools.build_meta"


[tool.setuptools_scm]
local_scheme = "dirty-tag"
write_to = "markov_builder/_version.py"

[project]
requires-python = ">=3.10"
dynamic = ["version"]
readme = { file = "README.md", content-type = "text/markdown" }

name = "markov_builder"

description = "Programmatically generate Markov models of ion-channel currents"

authors = [
            {name="Joseph Shuttleworth", email="joey.shuttleworth@nottingham.ac.uk"},
            {name="Dominic Whittaker"},
            {name="Michael Clerx"},
            {name="Maurice Hendrix"},
            {name="Gary Mirams"}
           ]


classifiers = [
    'Programming Language :: Python :: 3',
    'License :: OSI Approved :: BSD License',
    'Operating System :: OS Independent',
]

dependencies = [
        'scipy>=1.7',
        'numpy>=1.21',
        'sympy>=1.10',
        'networkx>=3.4.2',
        'numba>=0.61.2',
        'pygraphviz>=1.14'
]

[project.optional-dependencies]
test = [
          'pytest-cov>=2.10',     # For coverage checking
          'pytest>=4.6',          # For unit tests
          'flake8>=3.8',            # For code style checking
          'isort>=7.0.0',
          'codecov>=2.1.3',
          'matplotlib>=3.7.0',
          'myokit>=1.38.0',
          'seaborn>=0.13.0',
	        'pyvis>=0.3.2'
      ]

docs = [
	"sphinx>=9.0.0",
	"ruff>=0.14.7"
	]


[tool.setuptools.packages.find]
include = ["markov_builder"]

[project.urls]
Homepage = "https://github.com/CardiacModelling/markov-builder"
Source = "https://github.com/CardiacModelling/markov-builder"

[tool.isort]
skip_glob = ["**/_version.py", "**.conf.py", "**/docs", ".*"]

lines_after_imports = 2

[tool.ruff]
extend-select = ["D"]
fix = true
exclude = ["markov_builder/models/thirty_models/", "*/__init__.py"]

# Ignore empty docstring on init
ignore = ["D100", "D107"]

[tool.flake8]
max-line-length = 120
ignore = ["W391", "W503", "W504", "E226", "E501"]

exclude = [
    ".git",
    ".*",
    ".venv",
    "docs",
    "build",
    "doctrees",
    "test_output",
    "**/__pycache__",
    "*.egg_info"
]